Gene : Sobic.003G200800 S. bicolor v3.1.1
Defline:  (1 of 1) K02146 - V-type H+-transporting ATPase subunit d (ATPeV0D, ATP6D) Genomic Order:  2107
Name:  ? Sobic.003G200800 Secondary Identifier:  ? PAC:37916875
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.003G200800 0.5kb upstream 0.5kb upstream 4331 true Chr03: 52855959-52860289 Sorghum bicolor
Sobic.003G200800 0.5kb upstream 0.5kb upstream 500 false Chr03: 52859790-52860289 Sorghum bicolor
Sobic.003G200800 0.5kb downstream 0.5kb downstream 4331 true Chr03: 52855459-52859789 Sorghum bicolor
Sobic.003G200800 0.5kb downstream 0.5kb downstream 500 false Chr03: 52855459-52855958 Sorghum bicolor
Sobic.003G200800 1.0kb upstream 1.0kb upstream 4831 true Chr03: 52855959-52860789 Sorghum bicolor
Sobic.003G200800 1.0kb upstream 1.0kb upstream 1000 false Chr03: 52859790-52860789 Sorghum bicolor
Sobic.003G200800 1.0kb downstream 1.0kb downstream 4831 true Chr03: 52854959-52859789 Sorghum bicolor
Sobic.003G200800 1.0kb downstream 1.0kb downstream 1000 false Chr03: 52854959-52855958 Sorghum bicolor
Sobic.003G200800 2.0kb upstream 2.0kb upstream 5831 true Chr03: 52855959-52861789 Sorghum bicolor
Sobic.003G200800 2.0kb upstream 2.0kb upstream 2000 false Chr03: 52859790-52861789 Sorghum bicolor
Sobic.003G200800 2.0kb downstream 2.0kb downstream 5831 true Chr03: 52853959-52859789 Sorghum bicolor
Sobic.003G200800 2.0kb downstream 2.0kb downstream 2000 false Chr03: 52853959-52855958 Sorghum bicolor
Sobic.003G200800 5.0kb upstream 5.0kb upstream 8831 true Chr03: 52855959-52864789 Sorghum bicolor
Sobic.003G200800 5.0kb upstream 5.0kb upstream 5000 false Chr03: 52859790-52864789 Sorghum bicolor
Sobic.003G200800 5.0kb downstream 5.0kb downstream 8831 true Chr03: 52850959-52859789 Sorghum bicolor
Sobic.003G200800 5.0kb downstream 5.0kb downstream 5000 false Chr03: 52850959-52855958 Sorghum bicolor
Sobic.003G200800 10.0kb upstream 10.0kb upstream 13831 true Chr03: 52855959-52869789 Sorghum bicolor
Sobic.003G200800 10.0kb upstream 10.0kb upstream 10000 false Chr03: 52859790-52869789 Sorghum bicolor
Sobic.003G200800 10.0kb downstream 10.0kb downstream 13831 true Chr03: 52845959-52859789 Sorghum bicolor
Sobic.003G200800 10.0kb downstream 10.0kb downstream 10000 false Chr03: 52845959-52855958 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122184881 5267 Panicoideae View MSA
124576896 5269 Grass View MSA
122045239 5273 Angiosperm View MSA
121345158 5274 Embryophyte View MSA
123427776 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 41.234     High  
cufflinks 33.643     High Low
cufflinks 31.277     High Low
cufflinks 36.147     High  
cufflinks 68.902     High High
cufflinks 26.714     High Low
cufflinks 55.256     High  
cufflinks 37.205     High  
cufflinks 39.672     High  
cufflinks 45.046     High  
cufflinks 58.687     High  
cufflinks 50.07     High  
cufflinks 38.051     High  
cufflinks 63.088     High  
cufflinks 54.847     High  
cufflinks 36.677     High  
cufflinks 59.549     High  
cufflinks 59.881     High  
cufflinks 42.059     High  
cufflinks 61.788     High  
cufflinks 33.675     High Low
cufflinks 78.906     High High
cufflinks 68.3     High High
cufflinks 67.662     High  
cufflinks 32.453     High Low
cufflinks 32.631     High Low
cufflinks 46.678     High  
cufflinks 23.613     High Low
cufflinks 56.711     High  
cufflinks 59.193     High  

0 Strain