Gene : Sobic.003G218300 S. bicolor v3.1.1
Defline:  (1 of 1) 2.1.1.204 - tRNA (cytosine(38)-C(5))-methyltransferase Genomic Order:  2290
Name:  ? Sobic.003G218300 Secondary Identifier:  ? PAC:37917988
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.003G218300 0.5kb upstream 0.5kb upstream 4198 true Chr03: 55363922-55368119 Sorghum bicolor
Sobic.003G218300 0.5kb upstream 0.5kb upstream 500 false Chr03: 55367620-55368119 Sorghum bicolor
Sobic.003G218300 0.5kb downstream 0.5kb downstream 4198 true Chr03: 55363422-55367619 Sorghum bicolor
Sobic.003G218300 0.5kb downstream 0.5kb downstream 500 false Chr03: 55363422-55363921 Sorghum bicolor
Sobic.003G218300 1.0kb upstream 1.0kb upstream 4698 true Chr03: 55363922-55368619 Sorghum bicolor
Sobic.003G218300 1.0kb upstream 1.0kb upstream 1000 false Chr03: 55367620-55368619 Sorghum bicolor
Sobic.003G218300 1.0kb downstream 1.0kb downstream 4698 true Chr03: 55362922-55367619 Sorghum bicolor
Sobic.003G218300 1.0kb downstream 1.0kb downstream 1000 false Chr03: 55362922-55363921 Sorghum bicolor
Sobic.003G218300 2.0kb upstream 2.0kb upstream 5698 true Chr03: 55363922-55369619 Sorghum bicolor
Sobic.003G218300 2.0kb upstream 2.0kb upstream 2000 false Chr03: 55367620-55369619 Sorghum bicolor
Sobic.003G218300 2.0kb downstream 2.0kb downstream 5698 true Chr03: 55361922-55367619 Sorghum bicolor
Sobic.003G218300 2.0kb downstream 2.0kb downstream 2000 false Chr03: 55361922-55363921 Sorghum bicolor
Sobic.003G218300 5.0kb upstream 5.0kb upstream 8698 true Chr03: 55363922-55372619 Sorghum bicolor
Sobic.003G218300 5.0kb upstream 5.0kb upstream 5000 false Chr03: 55367620-55372619 Sorghum bicolor
Sobic.003G218300 5.0kb downstream 5.0kb downstream 8698 true Chr03: 55358922-55367619 Sorghum bicolor
Sobic.003G218300 5.0kb downstream 5.0kb downstream 5000 false Chr03: 55358922-55363921 Sorghum bicolor
Sobic.003G218300 10.0kb upstream 10.0kb upstream 13698 true Chr03: 55363922-55377619 Sorghum bicolor
Sobic.003G218300 10.0kb upstream 10.0kb upstream 10000 false Chr03: 55367620-55377619 Sorghum bicolor
Sobic.003G218300 10.0kb downstream 10.0kb downstream 13698 true Chr03: 55353922-55367619 Sorghum bicolor
Sobic.003G218300 10.0kb downstream 10.0kb downstream 10000 false Chr03: 55353922-55363921 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122185926 5267 Panicoideae View MSA
124578922 5269 Grass View MSA
122042989 5273 Angiosperm View MSA
121345070 5274 Embryophyte View MSA
123423972 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.411       High
cufflinks 0.82       Low
cufflinks 1.006       Low
cufflinks 1.32        
cufflinks 2.99        
cufflinks 2.393        
cufflinks 1.741        
cufflinks 1.486        
cufflinks 3.165       High
cufflinks 3.651       High
cufflinks 2.053        
cufflinks 3.016       High
cufflinks 3.163       High
cufflinks 2.683        
cufflinks 2.085        
cufflinks 1.144       Low
cufflinks 1.507        
cufflinks 1.597        
cufflinks 1.129       Low
cufflinks 1.741        
cufflinks 4.348       High
cufflinks 1.796        
cufflinks 2.532        
cufflinks 2.067        
cufflinks 1.162       Low
cufflinks 1.058       Low
cufflinks 2.509        
cufflinks 1.115       Low
cufflinks 1.719        
cufflinks 1.715        

0 Strain