Gene : Sobic.003G158300 S. bicolor v3.1.1
Defline:  (1 of 1) 1.1.1.35//4.2.1.17//4.2.1.55//5.1.2.3//5.3.3.8 - 3-hydroxyacyl-CoA dehydrogenase / Beta-keto-reductase // Enoyl-CoA hydratase / Unsaturated acyl-CoA hydratase // 3-hydroxybutyryl-CoA dehydratase / Crotonase // 3-hydroxybutyryl-CoA epimerase // Dodecenoyl-CoA isomerase / Dodecenoyl-CoA Delta-isomerase Genomic Order:  1656
Name:  ? Sobic.003G158300 Secondary Identifier:  ? PAC:37913870
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Sequence Feature Displayer

Ontology Annotation Displayer

12 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor ILEUDEG-PWY Sorghum bicolor pathologic  
Sbicolor PWY-5136 Sorghum bicolor pathologic  
Sbicolor PWY-5137 Sorghum bicolor pathologic  
Sbicolor PWY-5138 Sorghum bicolor pathologic  
Sbicolor PWY-561 Sorghum bicolor pathologic  
Sbicolor PWY-6435 Sorghum bicolor pathologic  
Sbicolor PWY-6837 Sorghum bicolor pathologic  
Sbicolor PWY-7036 Sorghum bicolor pathologic  
Sbicolor PWY-735 Sorghum bicolor pathologic  
Sbicolor PWY-7606 Sorghum bicolor pathologic  
Sbicolor PWY-7726 Sorghum bicolor pathologic  
Sbicolor VALDEG-PWY Sorghum bicolor pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.003G158300 0.5kb upstream 0.5kb upstream 7315 true Chr03: 18164170-18171484 Sorghum bicolor
Sobic.003G158300 0.5kb upstream 0.5kb upstream 500 false Chr03: 18164170-18164669 Sorghum bicolor
Sobic.003G158300 0.5kb downstream 0.5kb downstream 7315 true Chr03: 18164670-18171984 Sorghum bicolor
Sobic.003G158300 0.5kb downstream 0.5kb downstream 500 false Chr03: 18171485-18171984 Sorghum bicolor
Sobic.003G158300 1.0kb upstream 1.0kb upstream 7815 true Chr03: 18163670-18171484 Sorghum bicolor
Sobic.003G158300 1.0kb upstream 1.0kb upstream 1000 false Chr03: 18163670-18164669 Sorghum bicolor
Sobic.003G158300 1.0kb downstream 1.0kb downstream 7815 true Chr03: 18164670-18172484 Sorghum bicolor
Sobic.003G158300 1.0kb downstream 1.0kb downstream 1000 false Chr03: 18171485-18172484 Sorghum bicolor
Sobic.003G158300 2.0kb upstream 2.0kb upstream 8815 true Chr03: 18162670-18171484 Sorghum bicolor
Sobic.003G158300 2.0kb upstream 2.0kb upstream 2000 false Chr03: 18162670-18164669 Sorghum bicolor
Sobic.003G158300 2.0kb downstream 2.0kb downstream 8815 true Chr03: 18164670-18173484 Sorghum bicolor
Sobic.003G158300 2.0kb downstream 2.0kb downstream 2000 false Chr03: 18171485-18173484 Sorghum bicolor
Sobic.003G158300 5.0kb upstream 5.0kb upstream 11815 true Chr03: 18159670-18171484 Sorghum bicolor
Sobic.003G158300 5.0kb upstream 5.0kb upstream 5000 false Chr03: 18159670-18164669 Sorghum bicolor
Sobic.003G158300 5.0kb downstream 5.0kb downstream 11815 true Chr03: 18164670-18176484 Sorghum bicolor
Sobic.003G158300 5.0kb downstream 5.0kb downstream 5000 false Chr03: 18171485-18176484 Sorghum bicolor
Sobic.003G158300 10.0kb upstream 10.0kb upstream 16815 true Chr03: 18154670-18171484 Sorghum bicolor
Sobic.003G158300 10.0kb upstream 10.0kb upstream 10000 false Chr03: 18154670-18164669 Sorghum bicolor
Sobic.003G158300 10.0kb downstream 10.0kb downstream 16815 true Chr03: 18164670-18181484 Sorghum bicolor
Sobic.003G158300 10.0kb downstream 10.0kb downstream 10000 false Chr03: 18171485-18181484 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122189446 5267 Panicoideae View MSA
124568277 5269 Grass View MSA
122047259 5273 Angiosperm View MSA
121345387 5274 Embryophyte View MSA
123424743 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.081       Low
cufflinks 2.039       Low
cufflinks 3.923       Low
cufflinks 6.922        
cufflinks 7.307        
cufflinks 5.101        
cufflinks 10.593        
cufflinks 8.484        
cufflinks 8.042        
cufflinks 9.457        
cufflinks 11.042        
cufflinks 10.552        
cufflinks 9.034        
cufflinks 13.606     High High
cufflinks 13.515     High High
cufflinks 4.938        
cufflinks 11.791     High  
cufflinks 11.986     High  
cufflinks 5.185        
cufflinks 10.573        
cufflinks 7.344        
cufflinks 8.883        
cufflinks 13.14     High High
cufflinks 11.69     High  
cufflinks 3.276       Low
cufflinks 2.895       Low
cufflinks 14.086     High High
cufflinks 7.373        
cufflinks 12.301     High  
cufflinks 17.806     High High

0 Strain