Gene : Sobic.003G160500 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR13622//PTHR13622:SF6 - THIAMIN PYROPHOSPHOKINASE // SUBFAMILY NOT NAMED Genomic Order:  1680
Name:  ? Sobic.003G160500 Secondary Identifier:  ? PAC:37913722
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor PWY-6908 Sorghum bicolor pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.003G160500 0.5kb upstream 0.5kb upstream 9185 true Chr03: 19125439-19134623 Sorghum bicolor
Sobic.003G160500 0.5kb upstream 0.5kb upstream 500 false Chr03: 19134124-19134623 Sorghum bicolor
Sobic.003G160500 0.5kb downstream 0.5kb downstream 9185 true Chr03: 19124939-19134123 Sorghum bicolor
Sobic.003G160500 0.5kb downstream 0.5kb downstream 500 false Chr03: 19124939-19125438 Sorghum bicolor
Sobic.003G160500 1.0kb upstream 1.0kb upstream 9685 true Chr03: 19125439-19135123 Sorghum bicolor
Sobic.003G160500 1.0kb upstream 1.0kb upstream 1000 false Chr03: 19134124-19135123 Sorghum bicolor
Sobic.003G160500 1.0kb downstream 1.0kb downstream 9685 true Chr03: 19124439-19134123 Sorghum bicolor
Sobic.003G160500 1.0kb downstream 1.0kb downstream 1000 false Chr03: 19124439-19125438 Sorghum bicolor
Sobic.003G160500 2.0kb upstream 2.0kb upstream 10685 true Chr03: 19125439-19136123 Sorghum bicolor
Sobic.003G160500 2.0kb upstream 2.0kb upstream 2000 false Chr03: 19134124-19136123 Sorghum bicolor
Sobic.003G160500 2.0kb downstream 2.0kb downstream 10685 true Chr03: 19123439-19134123 Sorghum bicolor
Sobic.003G160500 2.0kb downstream 2.0kb downstream 2000 false Chr03: 19123439-19125438 Sorghum bicolor
Sobic.003G160500 5.0kb upstream 5.0kb upstream 13685 true Chr03: 19125439-19139123 Sorghum bicolor
Sobic.003G160500 5.0kb upstream 5.0kb upstream 5000 false Chr03: 19134124-19139123 Sorghum bicolor
Sobic.003G160500 5.0kb downstream 5.0kb downstream 13685 true Chr03: 19120439-19134123 Sorghum bicolor
Sobic.003G160500 5.0kb downstream 5.0kb downstream 5000 false Chr03: 19120439-19125438 Sorghum bicolor
Sobic.003G160500 10.0kb upstream 10.0kb upstream 18685 true Chr03: 19125439-19144123 Sorghum bicolor
Sobic.003G160500 10.0kb upstream 10.0kb upstream 10000 false Chr03: 19134124-19144123 Sorghum bicolor
Sobic.003G160500 10.0kb downstream 10.0kb downstream 18685 true Chr03: 19115439-19134123 Sorghum bicolor
Sobic.003G160500 10.0kb downstream 10.0kb downstream 10000 false Chr03: 19115439-19125438 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122189565 5267 Panicoideae View MSA
124575442 5269 Grass View MSA
122046316 5273 Angiosperm View MSA
121345006 5274 Embryophyte View MSA
123424730 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.495        
cufflinks 0.498       Low
cufflinks 0.774       Low
cufflinks 1.147        
cufflinks 1.654        
cufflinks 1.496        
cufflinks 1.417        
cufflinks 0.717       Low
cufflinks 1.7        
cufflinks 1.946       High
cufflinks 0.889        
cufflinks 1.319        
cufflinks 1.732       High
cufflinks 1.326        
cufflinks 1.886       High
cufflinks 0.655       Low
cufflinks 1.573        
cufflinks 1.484        
cufflinks 0.443       Low
cufflinks 1.741       High
cufflinks 1.635        
cufflinks 1.0        
cufflinks 1.217        
cufflinks 1.158        
cufflinks 0.519       Low
cufflinks 0.609       Low
cufflinks 1.117        
cufflinks 0.915        
cufflinks 1.504        
cufflinks 1.544        

0 Strain