Gene : Sobic.003G169900 S. bicolor v3.1.1
Defline:  (1 of 3) 1.1.1.25//4.2.1.10 - Shikimate dehydrogenase / Shikimate:NADP(+) oxidoreductase // 3-dehydroquinate dehydratase Genomic Order:  1775
Name:  ? Sobic.003G169900 Secondary Identifier:  ? PAC:37918137
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor ARO-PWY Sorghum bicolor pathologic  
Sbicolor PWY-6163 Sorghum bicolor pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.003G169900 0.5kb upstream 0.5kb upstream 38460 true Chr03: 29369236-29407695 Sorghum bicolor
Sobic.003G169900 0.5kb upstream 0.5kb upstream 500 false Chr03: 29369236-29369735 Sorghum bicolor
Sobic.003G169900 0.5kb downstream 0.5kb downstream 38460 true Chr03: 29369736-29408195 Sorghum bicolor
Sobic.003G169900 0.5kb downstream 0.5kb downstream 500 false Chr03: 29407696-29408195 Sorghum bicolor
Sobic.003G169900 1.0kb upstream 1.0kb upstream 38960 true Chr03: 29368736-29407695 Sorghum bicolor
Sobic.003G169900 1.0kb upstream 1.0kb upstream 1000 false Chr03: 29368736-29369735 Sorghum bicolor
Sobic.003G169900 1.0kb downstream 1.0kb downstream 38960 true Chr03: 29369736-29408695 Sorghum bicolor
Sobic.003G169900 1.0kb downstream 1.0kb downstream 1000 false Chr03: 29407696-29408695 Sorghum bicolor
Sobic.003G169900 2.0kb upstream 2.0kb upstream 39960 true Chr03: 29367736-29407695 Sorghum bicolor
Sobic.003G169900 2.0kb upstream 2.0kb upstream 2000 false Chr03: 29367736-29369735 Sorghum bicolor
Sobic.003G169900 2.0kb downstream 2.0kb downstream 39960 true Chr03: 29369736-29409695 Sorghum bicolor
Sobic.003G169900 2.0kb downstream 2.0kb downstream 2000 false Chr03: 29407696-29409695 Sorghum bicolor
Sobic.003G169900 5.0kb upstream 5.0kb upstream 42960 true Chr03: 29364736-29407695 Sorghum bicolor
Sobic.003G169900 5.0kb upstream 5.0kb upstream 5000 false Chr03: 29364736-29369735 Sorghum bicolor
Sobic.003G169900 5.0kb downstream 5.0kb downstream 42960 true Chr03: 29369736-29412695 Sorghum bicolor
Sobic.003G169900 5.0kb downstream 5.0kb downstream 5000 false Chr03: 29407696-29412695 Sorghum bicolor
Sobic.003G169900 10.0kb upstream 10.0kb upstream 47960 true Chr03: 29359736-29407695 Sorghum bicolor
Sobic.003G169900 10.0kb upstream 10.0kb upstream 10000 false Chr03: 29359736-29369735 Sorghum bicolor
Sobic.003G169900 10.0kb downstream 10.0kb downstream 47960 true Chr03: 29369736-29417695 Sorghum bicolor
Sobic.003G169900 10.0kb downstream 10.0kb downstream 10000 false Chr03: 29407696-29417695 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122189124 5267 Panicoideae View MSA
124570353 5269 Grass View MSA
122045026 5273 Angiosperm View MSA
121345779 5274 Embryophyte View MSA
123427556 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.024        
cufflinks 0.301       Low
cufflinks 0.388       Low
cufflinks 0.687        
cufflinks 1.268        
cufflinks 0.484       Low
cufflinks 0.995        
cufflinks 0.829        
cufflinks 0.786        
cufflinks 0.986        
cufflinks 1.772        
cufflinks 1.677        
cufflinks 1.509        
cufflinks 2.146       High
cufflinks 0.906        
cufflinks 0.373       Low
cufflinks 1.06        
cufflinks 1.185        
cufflinks 0.452       Low
cufflinks 0.849        
cufflinks 0.654        
cufflinks 1.934        
cufflinks 2.324       High
cufflinks 2.198       High
cufflinks 0.456       Low
cufflinks 0.336       Low
cufflinks 1.683        
cufflinks 0.142       Low
cufflinks 1.423        
cufflinks 0.884        

0 Strain