Gene : Sobic.003G181500 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR12555//PTHR12555:SF14 - UBIQUITIN FUSION DEGRADATON PROTEIN 1 // SUBFAMILY NOT NAMED Genomic Order:  1906
Name:  ? Sobic.003G181500 Secondary Identifier:  ? PAC:37914452
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0 Pathways

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.003G181500 0.5kb upstream 0.5kb upstream 3591 true Chr03: 47870867-47874457 Sorghum bicolor
Sobic.003G181500 0.5kb upstream 0.5kb upstream 500 false Chr03: 47870867-47871366 Sorghum bicolor
Sobic.003G181500 0.5kb downstream 0.5kb downstream 3591 true Chr03: 47871367-47874957 Sorghum bicolor
Sobic.003G181500 0.5kb downstream 0.5kb downstream 500 false Chr03: 47874458-47874957 Sorghum bicolor
Sobic.003G181500 1.0kb upstream 1.0kb upstream 4091 true Chr03: 47870367-47874457 Sorghum bicolor
Sobic.003G181500 1.0kb upstream 1.0kb upstream 1000 false Chr03: 47870367-47871366 Sorghum bicolor
Sobic.003G181500 1.0kb downstream 1.0kb downstream 4091 true Chr03: 47871367-47875457 Sorghum bicolor
Sobic.003G181500 1.0kb downstream 1.0kb downstream 1000 false Chr03: 47874458-47875457 Sorghum bicolor
Sobic.003G181500 2.0kb upstream 2.0kb upstream 5091 true Chr03: 47869367-47874457 Sorghum bicolor
Sobic.003G181500 2.0kb upstream 2.0kb upstream 2000 false Chr03: 47869367-47871366 Sorghum bicolor
Sobic.003G181500 2.0kb downstream 2.0kb downstream 5091 true Chr03: 47871367-47876457 Sorghum bicolor
Sobic.003G181500 2.0kb downstream 2.0kb downstream 2000 false Chr03: 47874458-47876457 Sorghum bicolor
Sobic.003G181500 5.0kb upstream 5.0kb upstream 8091 true Chr03: 47866367-47874457 Sorghum bicolor
Sobic.003G181500 5.0kb upstream 5.0kb upstream 5000 false Chr03: 47866367-47871366 Sorghum bicolor
Sobic.003G181500 5.0kb downstream 5.0kb downstream 8091 true Chr03: 47871367-47879457 Sorghum bicolor
Sobic.003G181500 5.0kb downstream 5.0kb downstream 5000 false Chr03: 47874458-47879457 Sorghum bicolor
Sobic.003G181500 10.0kb upstream 10.0kb upstream 13091 true Chr03: 47861367-47874457 Sorghum bicolor
Sobic.003G181500 10.0kb upstream 10.0kb upstream 10000 false Chr03: 47861367-47871366 Sorghum bicolor
Sobic.003G181500 10.0kb downstream 10.0kb downstream 13091 true Chr03: 47871367-47884457 Sorghum bicolor
Sobic.003G181500 10.0kb downstream 10.0kb downstream 10000 false Chr03: 47874458-47884457 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122185228 5267 Panicoideae View MSA
124576515 5269 Grass View MSA
122046586 5273 Angiosperm View MSA
121347183 5274 Embryophyte View MSA
123428055 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 22.102     High  
cufflinks 7.989     High Low
cufflinks 79.154     High High
cufflinks 50.655     High High
cufflinks 64.212     High High
cufflinks 43.912     High  
cufflinks 17.481     High  
cufflinks 13.592     High Low
cufflinks 48.061     High  
cufflinks 36.358     High  
cufflinks 53.376     High High
cufflinks 22.172     High  
cufflinks 46.376     High  
cufflinks 17.539     High  
cufflinks 50.342     High  
cufflinks 25.486     High  
cufflinks 21.746     High  
cufflinks 18.171     High  
cufflinks 48.425     High  
cufflinks 27.829     High  
cufflinks 17.62     High  
cufflinks 16.489     High  
cufflinks 18.763     High  
cufflinks 18.378     High  
cufflinks 11.549     High Low
cufflinks 9.508     High Low
cufflinks 63.083     High High
cufflinks 31.218     High  
cufflinks 11.965     High Low
cufflinks 46.001     High  

0 Strain