Gene : Sobic.003G181600 S. bicolor v3.1.1
Defline:  (1 of 2) PTHR13018//PTHR13018:SF48 - PROBABLE MEMBRANE PROTEIN DUF221-RELATED // SUBFAMILY NOT NAMED Genomic Order:  1907
Name:  ? Sobic.003G181600 Secondary Identifier:  ? PAC:37916318
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.003G181600 0.5kb upstream 0.5kb upstream 10224 true Chr03: 47876104-47886327 Sorghum bicolor
Sobic.003G181600 0.5kb upstream 0.5kb upstream 500 false Chr03: 47885828-47886327 Sorghum bicolor
Sobic.003G181600 0.5kb downstream 0.5kb downstream 10224 true Chr03: 47875604-47885827 Sorghum bicolor
Sobic.003G181600 0.5kb downstream 0.5kb downstream 500 false Chr03: 47875604-47876103 Sorghum bicolor
Sobic.003G181600 1.0kb upstream 1.0kb upstream 10724 true Chr03: 47876104-47886827 Sorghum bicolor
Sobic.003G181600 1.0kb upstream 1.0kb upstream 1000 false Chr03: 47885828-47886827 Sorghum bicolor
Sobic.003G181600 1.0kb downstream 1.0kb downstream 10724 true Chr03: 47875104-47885827 Sorghum bicolor
Sobic.003G181600 1.0kb downstream 1.0kb downstream 1000 false Chr03: 47875104-47876103 Sorghum bicolor
Sobic.003G181600 2.0kb upstream 2.0kb upstream 11724 true Chr03: 47876104-47887827 Sorghum bicolor
Sobic.003G181600 2.0kb upstream 2.0kb upstream 2000 false Chr03: 47885828-47887827 Sorghum bicolor
Sobic.003G181600 2.0kb downstream 2.0kb downstream 11724 true Chr03: 47874104-47885827 Sorghum bicolor
Sobic.003G181600 2.0kb downstream 2.0kb downstream 2000 false Chr03: 47874104-47876103 Sorghum bicolor
Sobic.003G181600 5.0kb upstream 5.0kb upstream 14724 true Chr03: 47876104-47890827 Sorghum bicolor
Sobic.003G181600 5.0kb upstream 5.0kb upstream 5000 false Chr03: 47885828-47890827 Sorghum bicolor
Sobic.003G181600 5.0kb downstream 5.0kb downstream 14724 true Chr03: 47871104-47885827 Sorghum bicolor
Sobic.003G181600 5.0kb downstream 5.0kb downstream 5000 false Chr03: 47871104-47876103 Sorghum bicolor
Sobic.003G181600 10.0kb upstream 10.0kb upstream 19724 true Chr03: 47876104-47895827 Sorghum bicolor
Sobic.003G181600 10.0kb upstream 10.0kb upstream 10000 false Chr03: 47885828-47895827 Sorghum bicolor
Sobic.003G181600 10.0kb downstream 10.0kb downstream 19724 true Chr03: 47866104-47885827 Sorghum bicolor
Sobic.003G181600 10.0kb downstream 10.0kb downstream 10000 false Chr03: 47866104-47876103 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122181639 5267 Panicoideae View MSA
124579853 5269 Grass View MSA
122047982 5273 Angiosperm View MSA
123429118 5275 Viridiplantae View MSA
121350338 5274 Embryophyte View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.833       Low
cufflinks 13.751     High  
cufflinks 32.6     High High
cufflinks 21.938     High  
cufflinks 19.063     High  
cufflinks 3.605       Low
cufflinks 11.395     High  
cufflinks 15.074     High  
cufflinks 12.022        
cufflinks 6.832       Low
cufflinks 18.046     High  
cufflinks 19.525     High  
cufflinks 11.22        
cufflinks 20.422     High  
cufflinks 10.806        
cufflinks 10.532     High  
cufflinks 12.113     High  
cufflinks 12.228     High  
cufflinks 17.805     High  
cufflinks 14.972     High  
cufflinks 8.898        
cufflinks 14.473     High  
cufflinks 16.646     High  
cufflinks 15.709     High  
cufflinks 4.853       Low
cufflinks 8.486     High  
cufflinks 30.529     High High
cufflinks 8.801        
cufflinks 20.547     High  
cufflinks 14.109     High  

0 Strain