Gene : Sobic.003G182100 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR23417//PTHR23417:SF18 - 3-DEOXY-D-MANNO-OCTULOSONIC-ACID TRANSFERASE/TRNA GUANINE-N 7 - -METHYLTRANSFERASE // SUBFAMILY NOT NAMED Genomic Order:  1911
Name:  ? Sobic.003G182100 Secondary Identifier:  ? PAC:37916473
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Ontology Annotation Displayer

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Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.003G182100 0.5kb upstream 0.5kb upstream 3420 true Chr03: 47944289-47947708 Sorghum bicolor
Sobic.003G182100 0.5kb upstream 0.5kb upstream 500 false Chr03: 47947209-47947708 Sorghum bicolor
Sobic.003G182100 0.5kb downstream 0.5kb downstream 3420 true Chr03: 47943789-47947208 Sorghum bicolor
Sobic.003G182100 0.5kb downstream 0.5kb downstream 500 false Chr03: 47943789-47944288 Sorghum bicolor
Sobic.003G182100 1.0kb upstream 1.0kb upstream 3920 true Chr03: 47944289-47948208 Sorghum bicolor
Sobic.003G182100 1.0kb upstream 1.0kb upstream 1000 false Chr03: 47947209-47948208 Sorghum bicolor
Sobic.003G182100 1.0kb downstream 1.0kb downstream 3920 true Chr03: 47943289-47947208 Sorghum bicolor
Sobic.003G182100 1.0kb downstream 1.0kb downstream 1000 false Chr03: 47943289-47944288 Sorghum bicolor
Sobic.003G182100 2.0kb upstream 2.0kb upstream 4920 true Chr03: 47944289-47949208 Sorghum bicolor
Sobic.003G182100 2.0kb upstream 2.0kb upstream 2000 false Chr03: 47947209-47949208 Sorghum bicolor
Sobic.003G182100 2.0kb downstream 2.0kb downstream 4920 true Chr03: 47942289-47947208 Sorghum bicolor
Sobic.003G182100 2.0kb downstream 2.0kb downstream 2000 false Chr03: 47942289-47944288 Sorghum bicolor
Sobic.003G182100 5.0kb upstream 5.0kb upstream 7920 true Chr03: 47944289-47952208 Sorghum bicolor
Sobic.003G182100 5.0kb upstream 5.0kb upstream 5000 false Chr03: 47947209-47952208 Sorghum bicolor
Sobic.003G182100 5.0kb downstream 5.0kb downstream 7920 true Chr03: 47939289-47947208 Sorghum bicolor
Sobic.003G182100 5.0kb downstream 5.0kb downstream 5000 false Chr03: 47939289-47944288 Sorghum bicolor
Sobic.003G182100 10.0kb upstream 10.0kb upstream 12920 true Chr03: 47944289-47957208 Sorghum bicolor
Sobic.003G182100 10.0kb upstream 10.0kb upstream 10000 false Chr03: 47947209-47957208 Sorghum bicolor
Sobic.003G182100 10.0kb downstream 10.0kb downstream 12920 true Chr03: 47934289-47947208 Sorghum bicolor
Sobic.003G182100 10.0kb downstream 10.0kb downstream 10000 false Chr03: 47934289-47944288 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122189119 5267 Panicoideae View MSA
124573695 5269 Grass View MSA
122047983 5273 Angiosperm View MSA
121345324 5274 Embryophyte View MSA
123425871 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.137       High
cufflinks 0.127       Low
cufflinks 0.523        
cufflinks 0.959        
cufflinks 1.311        
cufflinks 1.493       High
cufflinks 0.93        
cufflinks 0.573        
cufflinks 1.517       High
cufflinks 1.318        
cufflinks 0.552        
cufflinks 0.559        
cufflinks 0.654        
cufflinks 0.383        
cufflinks 1.032        
cufflinks 0.248       Low
cufflinks 0.948        
cufflinks 1.018        
cufflinks 0.373       Low
cufflinks 0.954        
cufflinks 2.362       High
cufflinks 0.73        
cufflinks 0.448        
cufflinks 0.498        
cufflinks 0.15       Low
cufflinks 0.145       Low
cufflinks 0.372       Low
cufflinks 1.469       High
cufflinks 2.054       High
cufflinks 1.209        

0 Strain