Gene : Sobic.003G182800 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR10791//PTHR10791:SF23 - RAG1-ACTIVATING PROTEIN 1 // SUBFAMILY NOT NAMED Genomic Order:  1918
Name:  ? Sobic.003G182800 Secondary Identifier:  ? PAC:37913806
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.003G182800 0.5kb upstream 0.5kb upstream 2950 true Chr03: 48311167-48314116 Sorghum bicolor
Sobic.003G182800 0.5kb upstream 0.5kb upstream 500 false Chr03: 48313617-48314116 Sorghum bicolor
Sobic.003G182800 0.5kb downstream 0.5kb downstream 2950 true Chr03: 48310667-48313616 Sorghum bicolor
Sobic.003G182800 0.5kb downstream 0.5kb downstream 500 false Chr03: 48310667-48311166 Sorghum bicolor
Sobic.003G182800 1.0kb upstream 1.0kb upstream 3450 true Chr03: 48311167-48314616 Sorghum bicolor
Sobic.003G182800 1.0kb upstream 1.0kb upstream 1000 false Chr03: 48313617-48314616 Sorghum bicolor
Sobic.003G182800 1.0kb downstream 1.0kb downstream 3450 true Chr03: 48310167-48313616 Sorghum bicolor
Sobic.003G182800 1.0kb downstream 1.0kb downstream 1000 false Chr03: 48310167-48311166 Sorghum bicolor
Sobic.003G182800 2.0kb upstream 2.0kb upstream 4450 true Chr03: 48311167-48315616 Sorghum bicolor
Sobic.003G182800 2.0kb upstream 2.0kb upstream 2000 false Chr03: 48313617-48315616 Sorghum bicolor
Sobic.003G182800 2.0kb downstream 2.0kb downstream 4450 true Chr03: 48309167-48313616 Sorghum bicolor
Sobic.003G182800 2.0kb downstream 2.0kb downstream 2000 false Chr03: 48309167-48311166 Sorghum bicolor
Sobic.003G182800 5.0kb upstream 5.0kb upstream 7450 true Chr03: 48311167-48318616 Sorghum bicolor
Sobic.003G182800 5.0kb upstream 5.0kb upstream 5000 false Chr03: 48313617-48318616 Sorghum bicolor
Sobic.003G182800 5.0kb downstream 5.0kb downstream 7450 true Chr03: 48306167-48313616 Sorghum bicolor
Sobic.003G182800 5.0kb downstream 5.0kb downstream 5000 false Chr03: 48306167-48311166 Sorghum bicolor
Sobic.003G182800 10.0kb upstream 10.0kb upstream 12450 true Chr03: 48311167-48323616 Sorghum bicolor
Sobic.003G182800 10.0kb upstream 10.0kb upstream 10000 false Chr03: 48313617-48323616 Sorghum bicolor
Sobic.003G182800 10.0kb downstream 10.0kb downstream 12450 true Chr03: 48301167-48313616 Sorghum bicolor
Sobic.003G182800 10.0kb downstream 10.0kb downstream 10000 false Chr03: 48301167-48311166 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122177535 5267 Panicoideae View MSA
124576748 5269 Grass View MSA
122048091 5273 Angiosperm View MSA
121310847 5274 Embryophyte View MSA
123348232 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.335       Low
cufflinks 2.162        
cufflinks 5.358        
cufflinks 1.54       Low
cufflinks 5.554        
cufflinks 1.986       Low
cufflinks 3.835        
cufflinks 10.448     High High
cufflinks 2.148        
cufflinks 2.155        
cufflinks 13.88     High High
cufflinks 6.662        
cufflinks 1.886       Low
cufflinks 8.745        
cufflinks 3.251        
cufflinks 2.773        
cufflinks 3.67        
cufflinks 3.242        
cufflinks 13.533     High High
cufflinks 3.244        
cufflinks 3.141        
cufflinks 12.264     High High
cufflinks 8.651        
cufflinks 9.15       High
cufflinks 1.792       Low
cufflinks 2.768        
cufflinks 6.652        
cufflinks 2.194        
cufflinks 11.415     High High
cufflinks 2.268        

0 Strain