Gene : Sobic.003G182400 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR30345 - RIBOSE-5-PHOSPHATE ISOMERASE B Genomic Order:  1914
Name:  ? Sobic.003G182400 Secondary Identifier:  ? PAC:37914954
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5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor CALVIN-PWY Sorghum bicolor pathologic  
Sbicolor NONOXIPENT-PWY Sorghum bicolor pathologic  
Sbicolor PENTOSE-P-PWY Sorghum bicolor pathologic  
Sbicolor PHOTOALL-PWY Sorghum bicolor pathologic  
Sbicolor PWY-5723 Sorghum bicolor pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.003G182400 0.5kb upstream 0.5kb upstream 1877 true Chr03: 48066015-48067891 Sorghum bicolor
Sobic.003G182400 0.5kb upstream 0.5kb upstream 500 false Chr03: 48067392-48067891 Sorghum bicolor
Sobic.003G182400 0.5kb downstream 0.5kb downstream 1877 true Chr03: 48065515-48067391 Sorghum bicolor
Sobic.003G182400 0.5kb downstream 0.5kb downstream 500 false Chr03: 48065515-48066014 Sorghum bicolor
Sobic.003G182400 1.0kb upstream 1.0kb upstream 2377 true Chr03: 48066015-48068391 Sorghum bicolor
Sobic.003G182400 1.0kb upstream 1.0kb upstream 1000 false Chr03: 48067392-48068391 Sorghum bicolor
Sobic.003G182400 1.0kb downstream 1.0kb downstream 2377 true Chr03: 48065015-48067391 Sorghum bicolor
Sobic.003G182400 1.0kb downstream 1.0kb downstream 1000 false Chr03: 48065015-48066014 Sorghum bicolor
Sobic.003G182400 2.0kb upstream 2.0kb upstream 3377 true Chr03: 48066015-48069391 Sorghum bicolor
Sobic.003G182400 2.0kb upstream 2.0kb upstream 2000 false Chr03: 48067392-48069391 Sorghum bicolor
Sobic.003G182400 2.0kb downstream 2.0kb downstream 3377 true Chr03: 48064015-48067391 Sorghum bicolor
Sobic.003G182400 2.0kb downstream 2.0kb downstream 2000 false Chr03: 48064015-48066014 Sorghum bicolor
Sobic.003G182400 5.0kb upstream 5.0kb upstream 6377 true Chr03: 48066015-48072391 Sorghum bicolor
Sobic.003G182400 5.0kb upstream 5.0kb upstream 5000 false Chr03: 48067392-48072391 Sorghum bicolor
Sobic.003G182400 5.0kb downstream 5.0kb downstream 6377 true Chr03: 48061015-48067391 Sorghum bicolor
Sobic.003G182400 5.0kb downstream 5.0kb downstream 5000 false Chr03: 48061015-48066014 Sorghum bicolor
Sobic.003G182400 10.0kb upstream 10.0kb upstream 11377 true Chr03: 48066015-48077391 Sorghum bicolor
Sobic.003G182400 10.0kb upstream 10.0kb upstream 10000 false Chr03: 48067392-48077391 Sorghum bicolor
Sobic.003G182400 10.0kb downstream 10.0kb downstream 11377 true Chr03: 48056015-48067391 Sorghum bicolor
Sobic.003G182400 10.0kb downstream 10.0kb downstream 10000 false Chr03: 48056015-48066014 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122186919 5267 Panicoideae View MSA
124569281 5269 Grass View MSA
122042906 5273 Angiosperm View MSA
121349668 5274 Embryophyte View MSA
123381392 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 20.448     High High
cufflinks 0.339       Low
cufflinks 0.334       Low
cufflinks 2.446        
cufflinks 7.485        
cufflinks 3.305        
cufflinks 5.037        
cufflinks 1.736        
cufflinks 7.834        
cufflinks 5.334        
cufflinks 6.687        
cufflinks 5.221        
cufflinks 3.019        
cufflinks 7.383        
cufflinks 2.931        
cufflinks 0.462       Low
cufflinks 4.574        
cufflinks 4.778        
cufflinks 0.549       Low
cufflinks 6.47        
cufflinks 5.976        
cufflinks 12.568     High High
cufflinks 6.548        
cufflinks 7.491        
cufflinks 0.512       Low
cufflinks 0.216       Low
cufflinks 2.169        
cufflinks 30.128     High High
cufflinks 5.09        
cufflinks 4.482        

0 Strain