Gene : Sobic.003G281200 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR10210//PTHR10210:SF45 - RIBOSE-PHOSPHATE PYROPHOSPHOKINASE // RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 3, CHLOROPLASTIC Genomic Order:  2957
Name:  ? Sobic.003G281200 Secondary Identifier:  ? PAC:37917941
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor PWY0-662 Sorghum bicolor pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.003G281200 0.5kb upstream 0.5kb upstream 6855 true Chr03: 61615456-61622310 Sorghum bicolor
Sobic.003G281200 0.5kb upstream 0.5kb upstream 500 false Chr03: 61615456-61615955 Sorghum bicolor
Sobic.003G281200 0.5kb downstream 0.5kb downstream 6855 true Chr03: 61615956-61622810 Sorghum bicolor
Sobic.003G281200 0.5kb downstream 0.5kb downstream 500 false Chr03: 61622311-61622810 Sorghum bicolor
Sobic.003G281200 1.0kb upstream 1.0kb upstream 7355 true Chr03: 61614956-61622310 Sorghum bicolor
Sobic.003G281200 1.0kb upstream 1.0kb upstream 1000 false Chr03: 61614956-61615955 Sorghum bicolor
Sobic.003G281200 1.0kb downstream 1.0kb downstream 7355 true Chr03: 61615956-61623310 Sorghum bicolor
Sobic.003G281200 1.0kb downstream 1.0kb downstream 1000 false Chr03: 61622311-61623310 Sorghum bicolor
Sobic.003G281200 2.0kb upstream 2.0kb upstream 8355 true Chr03: 61613956-61622310 Sorghum bicolor
Sobic.003G281200 2.0kb upstream 2.0kb upstream 2000 false Chr03: 61613956-61615955 Sorghum bicolor
Sobic.003G281200 2.0kb downstream 2.0kb downstream 8355 true Chr03: 61615956-61624310 Sorghum bicolor
Sobic.003G281200 2.0kb downstream 2.0kb downstream 2000 false Chr03: 61622311-61624310 Sorghum bicolor
Sobic.003G281200 5.0kb upstream 5.0kb upstream 11355 true Chr03: 61610956-61622310 Sorghum bicolor
Sobic.003G281200 5.0kb upstream 5.0kb upstream 5000 false Chr03: 61610956-61615955 Sorghum bicolor
Sobic.003G281200 5.0kb downstream 5.0kb downstream 11355 true Chr03: 61615956-61627310 Sorghum bicolor
Sobic.003G281200 5.0kb downstream 5.0kb downstream 5000 false Chr03: 61622311-61627310 Sorghum bicolor
Sobic.003G281200 10.0kb upstream 10.0kb upstream 16355 true Chr03: 61605956-61622310 Sorghum bicolor
Sobic.003G281200 10.0kb upstream 10.0kb upstream 10000 false Chr03: 61605956-61615955 Sorghum bicolor
Sobic.003G281200 10.0kb downstream 10.0kb downstream 16355 true Chr03: 61615956-61632310 Sorghum bicolor
Sobic.003G281200 10.0kb downstream 10.0kb downstream 10000 false Chr03: 61622311-61632310 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122185893 5267 Panicoideae View MSA
124584463 5269 Grass View MSA
122048410 5273 Angiosperm View MSA
121347977 5274 Embryophyte View MSA
123424356 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.447        
cufflinks 0.351       Low
cufflinks 3.017        
cufflinks 1.37        
cufflinks 6.482       High
cufflinks 1.569        
cufflinks 0.974        
cufflinks 1.039        
cufflinks 1.098        
cufflinks 1.079        
cufflinks 4.802        
cufflinks 1.482        
cufflinks 1.371        
cufflinks 3.544        
cufflinks 1.904        
cufflinks 0.65       Low
cufflinks 0.834       Low
cufflinks 1.008        
cufflinks 5.252       High
cufflinks 0.498       Low
cufflinks 3.744        
cufflinks 2.882        
cufflinks 2.051        
cufflinks 1.713        
cufflinks 0.327       Low
cufflinks 0.38       Low
cufflinks 8.223       High
cufflinks 2.718        
cufflinks 4.172        
cufflinks 2.348        

0 Strain