Gene : Sobic.003G243600 S. bicolor v3.1.1
Defline:  (1 of 1) KOG0426 - Ubiquitin-protein ligase Genomic Order:  2556
Name:  ? Sobic.003G243600 Secondary Identifier:  ? PAC:37914877
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor PWY-7511 Sorghum bicolor pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.003G243600 0.5kb upstream 0.5kb upstream 3770 true Chr03: 58300832-58304601 Sorghum bicolor
Sobic.003G243600 0.5kb upstream 0.5kb upstream 500 false Chr03: 58304102-58304601 Sorghum bicolor
Sobic.003G243600 0.5kb downstream 0.5kb downstream 3770 true Chr03: 58300332-58304101 Sorghum bicolor
Sobic.003G243600 0.5kb downstream 0.5kb downstream 500 false Chr03: 58300332-58300831 Sorghum bicolor
Sobic.003G243600 1.0kb upstream 1.0kb upstream 4270 true Chr03: 58300832-58305101 Sorghum bicolor
Sobic.003G243600 1.0kb upstream 1.0kb upstream 1000 false Chr03: 58304102-58305101 Sorghum bicolor
Sobic.003G243600 1.0kb downstream 1.0kb downstream 4270 true Chr03: 58299832-58304101 Sorghum bicolor
Sobic.003G243600 1.0kb downstream 1.0kb downstream 1000 false Chr03: 58299832-58300831 Sorghum bicolor
Sobic.003G243600 2.0kb upstream 2.0kb upstream 5270 true Chr03: 58300832-58306101 Sorghum bicolor
Sobic.003G243600 2.0kb upstream 2.0kb upstream 2000 false Chr03: 58304102-58306101 Sorghum bicolor
Sobic.003G243600 2.0kb downstream 2.0kb downstream 5270 true Chr03: 58298832-58304101 Sorghum bicolor
Sobic.003G243600 2.0kb downstream 2.0kb downstream 2000 false Chr03: 58298832-58300831 Sorghum bicolor
Sobic.003G243600 5.0kb upstream 5.0kb upstream 8270 true Chr03: 58300832-58309101 Sorghum bicolor
Sobic.003G243600 5.0kb upstream 5.0kb upstream 5000 false Chr03: 58304102-58309101 Sorghum bicolor
Sobic.003G243600 5.0kb downstream 5.0kb downstream 8270 true Chr03: 58295832-58304101 Sorghum bicolor
Sobic.003G243600 5.0kb downstream 5.0kb downstream 5000 false Chr03: 58295832-58300831 Sorghum bicolor
Sobic.003G243600 10.0kb upstream 10.0kb upstream 13270 true Chr03: 58300832-58314101 Sorghum bicolor
Sobic.003G243600 10.0kb upstream 10.0kb upstream 10000 false Chr03: 58304102-58314101 Sorghum bicolor
Sobic.003G243600 10.0kb downstream 10.0kb downstream 13270 true Chr03: 58290832-58304101 Sorghum bicolor
Sobic.003G243600 10.0kb downstream 10.0kb downstream 10000 false Chr03: 58290832-58300831 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121993289 5273 Angiosperm View MSA
122185902 5267 Panicoideae View MSA
124576931 5269 Grass View MSA
121263582 5274 Embryophyte View MSA
123428086 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 34.936     High  
cufflinks 89.816     High  
cufflinks 195.847     High High
cufflinks 164.37     High High
cufflinks 31.382     High  
cufflinks 99.267     High  
cufflinks 47.216     High  
cufflinks 55.537     High  
cufflinks 66.053     High  
cufflinks 88.756     High  
cufflinks 37.185     High  
cufflinks 52.887     High  
cufflinks 80.792     High  
cufflinks 49.685     High  
cufflinks 79.06     High  
cufflinks 120.207     High High
cufflinks 48.916     High  
cufflinks 51.176     High  
cufflinks 89.751     High  
cufflinks 91.641     High  
cufflinks 30.183     High Low
cufflinks 42.238     High  
cufflinks 41.024     High  
cufflinks 41.351     High  
cufflinks 121.63     High High
cufflinks 67.771     High  
cufflinks 50.039     High  
cufflinks 5.52       Low
cufflinks 29.536     High Low
cufflinks 50.732     High  

0 Strain