Gene : Sobic.003G246000 S. bicolor v3.1.1
Defline:  (1 of 1) K03681 - exosome complex component RRP40 (RRP40, EXOSC3) Genomic Order:  2584
Name:  ? Sobic.003G246000 Secondary Identifier:  ? PAC:37918575
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Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.003G246000 0.5kb upstream 0.5kb upstream 5814 true Chr03: 58487972-58493785 Sorghum bicolor
Sobic.003G246000 0.5kb upstream 0.5kb upstream 500 false Chr03: 58487972-58488471 Sorghum bicolor
Sobic.003G246000 0.5kb downstream 0.5kb downstream 5814 true Chr03: 58488472-58494285 Sorghum bicolor
Sobic.003G246000 0.5kb downstream 0.5kb downstream 500 false Chr03: 58493786-58494285 Sorghum bicolor
Sobic.003G246000 1.0kb upstream 1.0kb upstream 6314 true Chr03: 58487472-58493785 Sorghum bicolor
Sobic.003G246000 1.0kb upstream 1.0kb upstream 1000 false Chr03: 58487472-58488471 Sorghum bicolor
Sobic.003G246000 1.0kb downstream 1.0kb downstream 6314 true Chr03: 58488472-58494785 Sorghum bicolor
Sobic.003G246000 1.0kb downstream 1.0kb downstream 1000 false Chr03: 58493786-58494785 Sorghum bicolor
Sobic.003G246000 2.0kb upstream 2.0kb upstream 7314 true Chr03: 58486472-58493785 Sorghum bicolor
Sobic.003G246000 2.0kb upstream 2.0kb upstream 2000 false Chr03: 58486472-58488471 Sorghum bicolor
Sobic.003G246000 2.0kb downstream 2.0kb downstream 7314 true Chr03: 58488472-58495785 Sorghum bicolor
Sobic.003G246000 2.0kb downstream 2.0kb downstream 2000 false Chr03: 58493786-58495785 Sorghum bicolor
Sobic.003G246000 5.0kb upstream 5.0kb upstream 10314 true Chr03: 58483472-58493785 Sorghum bicolor
Sobic.003G246000 5.0kb upstream 5.0kb upstream 5000 false Chr03: 58483472-58488471 Sorghum bicolor
Sobic.003G246000 5.0kb downstream 5.0kb downstream 10314 true Chr03: 58488472-58498785 Sorghum bicolor
Sobic.003G246000 5.0kb downstream 5.0kb downstream 5000 false Chr03: 58493786-58498785 Sorghum bicolor
Sobic.003G246000 10.0kb upstream 10.0kb upstream 15314 true Chr03: 58478472-58493785 Sorghum bicolor
Sobic.003G246000 10.0kb upstream 10.0kb upstream 10000 false Chr03: 58478472-58488471 Sorghum bicolor
Sobic.003G246000 10.0kb downstream 10.0kb downstream 15314 true Chr03: 58488472-58503785 Sorghum bicolor
Sobic.003G246000 10.0kb downstream 10.0kb downstream 10000 false Chr03: 58493786-58503785 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122183592 5267 Panicoideae View MSA
124589254 5269 Grass View MSA
122045630 5273 Angiosperm View MSA
121344862 5274 Embryophyte View MSA
123428759 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.735       High
cufflinks 0.251       Low
cufflinks 0.957        
cufflinks 3.4        
cufflinks 3.281        
cufflinks 2.79        
cufflinks 1.647        
cufflinks 0.314       Low
cufflinks 3.124        
cufflinks 3.591        
cufflinks 2.489        
cufflinks 2.291        
cufflinks 1.954        
cufflinks 2.006        
cufflinks 2.332        
cufflinks 0.797       Low
cufflinks 1.944        
cufflinks 2.307        
cufflinks 0.66       Low
cufflinks 2.022        
cufflinks 5.015       High
cufflinks 2.988        
cufflinks 2.544        
cufflinks 2.577        
cufflinks 0.452       Low
cufflinks 0.155       Low
cufflinks 3.111        
cufflinks 2.49        
cufflinks 2.023        
cufflinks 3.74        

0 Strain