Gene : Sobic.003G269300 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR10791//PTHR10791:SF54 - RAG1-ACTIVATING PROTEIN 1 // SUBFAMILY NOT NAMED Genomic Order:  2832
Name:  ? Sobic.003G269300 Secondary Identifier:  ? PAC:37918534
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0 Pathways

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.003G269300 0.5kb upstream 0.5kb upstream 6150 true Chr03: 60605592-60611741 Sorghum bicolor
Sobic.003G269300 0.5kb upstream 0.5kb upstream 500 false Chr03: 60605592-60606091 Sorghum bicolor
Sobic.003G269300 0.5kb downstream 0.5kb downstream 6150 true Chr03: 60606092-60612241 Sorghum bicolor
Sobic.003G269300 0.5kb downstream 0.5kb downstream 500 false Chr03: 60611742-60612241 Sorghum bicolor
Sobic.003G269300 1.0kb upstream 1.0kb upstream 6650 true Chr03: 60605092-60611741 Sorghum bicolor
Sobic.003G269300 1.0kb upstream 1.0kb upstream 1000 false Chr03: 60605092-60606091 Sorghum bicolor
Sobic.003G269300 1.0kb downstream 1.0kb downstream 6650 true Chr03: 60606092-60612741 Sorghum bicolor
Sobic.003G269300 1.0kb downstream 1.0kb downstream 1000 false Chr03: 60611742-60612741 Sorghum bicolor
Sobic.003G269300 2.0kb upstream 2.0kb upstream 7650 true Chr03: 60604092-60611741 Sorghum bicolor
Sobic.003G269300 2.0kb upstream 2.0kb upstream 2000 false Chr03: 60604092-60606091 Sorghum bicolor
Sobic.003G269300 2.0kb downstream 2.0kb downstream 7650 true Chr03: 60606092-60613741 Sorghum bicolor
Sobic.003G269300 2.0kb downstream 2.0kb downstream 2000 false Chr03: 60611742-60613741 Sorghum bicolor
Sobic.003G269300 5.0kb upstream 5.0kb upstream 10650 true Chr03: 60601092-60611741 Sorghum bicolor
Sobic.003G269300 5.0kb upstream 5.0kb upstream 5000 false Chr03: 60601092-60606091 Sorghum bicolor
Sobic.003G269300 5.0kb downstream 5.0kb downstream 10650 true Chr03: 60606092-60616741 Sorghum bicolor
Sobic.003G269300 5.0kb downstream 5.0kb downstream 5000 false Chr03: 60611742-60616741 Sorghum bicolor
Sobic.003G269300 10.0kb upstream 10.0kb upstream 15650 true Chr03: 60596092-60611741 Sorghum bicolor
Sobic.003G269300 10.0kb upstream 10.0kb upstream 10000 false Chr03: 60596092-60606091 Sorghum bicolor
Sobic.003G269300 10.0kb downstream 10.0kb downstream 15650 true Chr03: 60606092-60621741 Sorghum bicolor
Sobic.003G269300 10.0kb downstream 10.0kb downstream 10000 false Chr03: 60611742-60621741 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122189878 5267 Panicoideae View MSA
124571013 5269 Grass View MSA
122048091 5273 Angiosperm View MSA
121310847 5274 Embryophyte View MSA
123348232 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.072     Low Low
cufflinks 132.674     High High
cufflinks 56.905     High High
cufflinks 29.096     High  
cufflinks 0.731        
cufflinks 30.737     High  
cufflinks 55.494     High High
cufflinks 60.712     High High
cufflinks 2.546        
cufflinks 2.937        
cufflinks 1.617        
cufflinks 0.409        
cufflinks 5.523        
cufflinks 0.439        
cufflinks 17.29     High  
cufflinks 24.193     High  
cufflinks 25.945     High  
cufflinks 40.78     High  
cufflinks 40.335     High  
cufflinks 13.211     High  
cufflinks 0.009     Low Low
cufflinks 0.765        
cufflinks 1.807        
cufflinks 2.088        
cufflinks 136.607     High High
cufflinks 73.836     High High
cufflinks 0.45        
cufflinks 0.016     Low Low
cufflinks 28.069     High  
cufflinks 7.684        

0 Strain