Gene : Sobic.003G317200 S. bicolor v3.1.1
Defline:  (1 of 1) K12184 - ESCRT-I complex subunit VPS28 (VPS28) Genomic Order:  3337
Name:  ? Sobic.003G317200 Secondary Identifier:  ? PAC:37913184
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Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.003G317200 0.5kb upstream 0.5kb upstream 2973 true Chr03: 64497309-64500281 Sorghum bicolor
Sobic.003G317200 0.5kb upstream 0.5kb upstream 500 false Chr03: 64497309-64497808 Sorghum bicolor
Sobic.003G317200 0.5kb downstream 0.5kb downstream 2973 true Chr03: 64497809-64500781 Sorghum bicolor
Sobic.003G317200 0.5kb downstream 0.5kb downstream 500 false Chr03: 64500282-64500781 Sorghum bicolor
Sobic.003G317200 1.0kb upstream 1.0kb upstream 3473 true Chr03: 64496809-64500281 Sorghum bicolor
Sobic.003G317200 1.0kb upstream 1.0kb upstream 1000 false Chr03: 64496809-64497808 Sorghum bicolor
Sobic.003G317200 1.0kb downstream 1.0kb downstream 3473 true Chr03: 64497809-64501281 Sorghum bicolor
Sobic.003G317200 1.0kb downstream 1.0kb downstream 1000 false Chr03: 64500282-64501281 Sorghum bicolor
Sobic.003G317200 2.0kb upstream 2.0kb upstream 4473 true Chr03: 64495809-64500281 Sorghum bicolor
Sobic.003G317200 2.0kb upstream 2.0kb upstream 2000 false Chr03: 64495809-64497808 Sorghum bicolor
Sobic.003G317200 2.0kb downstream 2.0kb downstream 4473 true Chr03: 64497809-64502281 Sorghum bicolor
Sobic.003G317200 2.0kb downstream 2.0kb downstream 2000 false Chr03: 64500282-64502281 Sorghum bicolor
Sobic.003G317200 5.0kb upstream 5.0kb upstream 7473 true Chr03: 64492809-64500281 Sorghum bicolor
Sobic.003G317200 5.0kb upstream 5.0kb upstream 5000 false Chr03: 64492809-64497808 Sorghum bicolor
Sobic.003G317200 5.0kb downstream 5.0kb downstream 7473 true Chr03: 64497809-64505281 Sorghum bicolor
Sobic.003G317200 5.0kb downstream 5.0kb downstream 5000 false Chr03: 64500282-64505281 Sorghum bicolor
Sobic.003G317200 10.0kb upstream 10.0kb upstream 12473 true Chr03: 64487809-64500281 Sorghum bicolor
Sobic.003G317200 10.0kb upstream 10.0kb upstream 10000 false Chr03: 64487809-64497808 Sorghum bicolor
Sobic.003G317200 10.0kb downstream 10.0kb downstream 12473 true Chr03: 64497809-64510281 Sorghum bicolor
Sobic.003G317200 10.0kb downstream 10.0kb downstream 10000 false Chr03: 64500282-64510281 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122181735 5267 Panicoideae View MSA
124572252 5269 Grass View MSA
122044389 5273 Angiosperm View MSA
121350792 5274 Embryophyte View MSA
123425897 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.518     High High
cufflinks 7.085     High  
cufflinks 5.595        
cufflinks 7.232        
cufflinks 5.217        
cufflinks 6.566        
cufflinks 4.975        
cufflinks 4.7        
cufflinks 6.304        
cufflinks 6.391        
cufflinks 4.887        
cufflinks 5.473        
cufflinks 5.512        
cufflinks 5.371        
cufflinks 6.013        
cufflinks 5.455        
cufflinks 4.34        
cufflinks 4.259        
cufflinks 7.439       High
cufflinks 5.773        
cufflinks 3.457       Low
cufflinks 5.236        
cufflinks 3.989       Low
cufflinks 3.722       Low
cufflinks 8.085       High
cufflinks 4.82        
cufflinks 6.268        
cufflinks 9.216       High
cufflinks 4.654        
cufflinks 7.27        

0 Strain