Gene : Sobic.003G321600 S. bicolor v3.1.1
Defline:  (1 of 59) PF01535//PF13041//PF13812 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) Genomic Order:  3385
Name:  ? Sobic.003G321600 Secondary Identifier:  ? PAC:37917113
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Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.003G321600 0.5kb upstream 0.5kb upstream 2963 true Chr03: 64901093-64904055 Sorghum bicolor
Sobic.003G321600 0.5kb upstream 0.5kb upstream 500 false Chr03: 64903556-64904055 Sorghum bicolor
Sobic.003G321600 0.5kb downstream 0.5kb downstream 2963 true Chr03: 64900593-64903555 Sorghum bicolor
Sobic.003G321600 0.5kb downstream 0.5kb downstream 500 false Chr03: 64900593-64901092 Sorghum bicolor
Sobic.003G321600 1.0kb upstream 1.0kb upstream 3463 true Chr03: 64901093-64904555 Sorghum bicolor
Sobic.003G321600 1.0kb upstream 1.0kb upstream 1000 false Chr03: 64903556-64904555 Sorghum bicolor
Sobic.003G321600 1.0kb downstream 1.0kb downstream 3463 true Chr03: 64900093-64903555 Sorghum bicolor
Sobic.003G321600 1.0kb downstream 1.0kb downstream 1000 false Chr03: 64900093-64901092 Sorghum bicolor
Sobic.003G321600 2.0kb upstream 2.0kb upstream 4463 true Chr03: 64901093-64905555 Sorghum bicolor
Sobic.003G321600 2.0kb upstream 2.0kb upstream 2000 false Chr03: 64903556-64905555 Sorghum bicolor
Sobic.003G321600 2.0kb downstream 2.0kb downstream 4463 true Chr03: 64899093-64903555 Sorghum bicolor
Sobic.003G321600 2.0kb downstream 2.0kb downstream 2000 false Chr03: 64899093-64901092 Sorghum bicolor
Sobic.003G321600 5.0kb upstream 5.0kb upstream 7463 true Chr03: 64901093-64908555 Sorghum bicolor
Sobic.003G321600 5.0kb upstream 5.0kb upstream 5000 false Chr03: 64903556-64908555 Sorghum bicolor
Sobic.003G321600 5.0kb downstream 5.0kb downstream 7463 true Chr03: 64896093-64903555 Sorghum bicolor
Sobic.003G321600 5.0kb downstream 5.0kb downstream 5000 false Chr03: 64896093-64901092 Sorghum bicolor
Sobic.003G321600 10.0kb upstream 10.0kb upstream 12463 true Chr03: 64901093-64913555 Sorghum bicolor
Sobic.003G321600 10.0kb upstream 10.0kb upstream 10000 false Chr03: 64903556-64913555 Sorghum bicolor
Sobic.003G321600 10.0kb downstream 10.0kb downstream 12463 true Chr03: 64891093-64903555 Sorghum bicolor
Sobic.003G321600 10.0kb downstream 10.0kb downstream 10000 false Chr03: 64891093-64901092 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122185564 5267 Panicoideae View MSA
124584548 5269 Grass View MSA
122043654 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351271 5274 Embryophyte View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.277       High
cufflinks 1.002        
cufflinks 0.766       Low
cufflinks 0.851       Low
cufflinks 2.532       High
cufflinks 2.363       High
cufflinks 1.756        
cufflinks 0.558       Low
cufflinks 1.833        
cufflinks 2.085        
cufflinks 1.292        
cufflinks 1.858        
cufflinks 1.611        
cufflinks 1.373        
cufflinks 1.915        
cufflinks 1.473        
cufflinks 1.638        
cufflinks 1.741        
cufflinks 1.117        
cufflinks 1.869        
cufflinks 4.143       High
cufflinks 1.209        
cufflinks 1.596        
cufflinks 1.598        
cufflinks 0.891       Low
cufflinks 0.939       Low
cufflinks 1.024        
cufflinks 1.788        
cufflinks 0.854       Low
cufflinks 2.496       High

0 Strain