Gene : Sobic.003G328900 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR12917//PTHR12917:SF20 - ASPARTYL PROTEASE DDI-RELATED // SUBFAMILY NOT NAMED Genomic Order:  3461
Name:  ? Sobic.003G328900 Secondary Identifier:  ? PAC:37917146
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Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.003G328900 0.5kb upstream 0.5kb upstream 3548 true Chr03: 65414383-65417930 Sorghum bicolor
Sobic.003G328900 0.5kb upstream 0.5kb upstream 500 false Chr03: 65417431-65417930 Sorghum bicolor
Sobic.003G328900 0.5kb downstream 0.5kb downstream 3548 true Chr03: 65413883-65417430 Sorghum bicolor
Sobic.003G328900 0.5kb downstream 0.5kb downstream 500 false Chr03: 65413883-65414382 Sorghum bicolor
Sobic.003G328900 1.0kb upstream 1.0kb upstream 4048 true Chr03: 65414383-65418430 Sorghum bicolor
Sobic.003G328900 1.0kb upstream 1.0kb upstream 1000 false Chr03: 65417431-65418430 Sorghum bicolor
Sobic.003G328900 1.0kb downstream 1.0kb downstream 4048 true Chr03: 65413383-65417430 Sorghum bicolor
Sobic.003G328900 1.0kb downstream 1.0kb downstream 1000 false Chr03: 65413383-65414382 Sorghum bicolor
Sobic.003G328900 2.0kb upstream 2.0kb upstream 5048 true Chr03: 65414383-65419430 Sorghum bicolor
Sobic.003G328900 2.0kb upstream 2.0kb upstream 2000 false Chr03: 65417431-65419430 Sorghum bicolor
Sobic.003G328900 2.0kb downstream 2.0kb downstream 5048 true Chr03: 65412383-65417430 Sorghum bicolor
Sobic.003G328900 2.0kb downstream 2.0kb downstream 2000 false Chr03: 65412383-65414382 Sorghum bicolor
Sobic.003G328900 5.0kb upstream 5.0kb upstream 8048 true Chr03: 65414383-65422430 Sorghum bicolor
Sobic.003G328900 5.0kb upstream 5.0kb upstream 5000 false Chr03: 65417431-65422430 Sorghum bicolor
Sobic.003G328900 5.0kb downstream 5.0kb downstream 8048 true Chr03: 65409383-65417430 Sorghum bicolor
Sobic.003G328900 5.0kb downstream 5.0kb downstream 5000 false Chr03: 65409383-65414382 Sorghum bicolor
Sobic.003G328900 10.0kb upstream 10.0kb upstream 13048 true Chr03: 65414383-65427430 Sorghum bicolor
Sobic.003G328900 10.0kb upstream 10.0kb upstream 10000 false Chr03: 65417431-65427430 Sorghum bicolor
Sobic.003G328900 10.0kb downstream 10.0kb downstream 13048 true Chr03: 65404383-65417430 Sorghum bicolor
Sobic.003G328900 10.0kb downstream 10.0kb downstream 10000 false Chr03: 65404383-65414382 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122182447 5267 Panicoideae View MSA
124568976 5269 Grass View MSA
122046571 5273 Angiosperm View MSA
121349564 5274 Embryophyte View MSA
123424365 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.837        
cufflinks 0.104       Low
cufflinks 0.344       Low
cufflinks 0.42       Low
cufflinks 7.439       High
cufflinks 1.173        
cufflinks 2.079        
cufflinks 1.486        
cufflinks 3.373        
cufflinks 2.839        
cufflinks 1.614        
cufflinks 1.791        
cufflinks 2.54        
cufflinks 2.029        
cufflinks 4.212        
cufflinks 0.392       Low
cufflinks 2.347        
cufflinks 2.368        
cufflinks 0.629       Low
cufflinks 2.82        
cufflinks 9.223       High
cufflinks 2.459        
cufflinks 2.091        
cufflinks 2.091        
cufflinks 0.22       Low
cufflinks 0.204       Low
cufflinks 2.232        
cufflinks 2.197        
cufflinks 3.028        
cufflinks 4.826       High

0 Strain