Gene : Sobic.003G329900 S. bicolor v3.1.1
Defline:  (1 of 1) 1.1.99.2 - L-2-hydroxyglutarate dehydrogenase / L-alpha-hydroxyglutarate dehydrogenase Genomic Order:  3471
Name:  ? Sobic.003G329900 Secondary Identifier:  ? PAC:37916152
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Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.003G329900 0.5kb upstream 0.5kb upstream 3663 true Chr03: 65512472-65516134 Sorghum bicolor
Sobic.003G329900 0.5kb upstream 0.5kb upstream 500 false Chr03: 65512472-65512971 Sorghum bicolor
Sobic.003G329900 0.5kb downstream 0.5kb downstream 3663 true Chr03: 65512972-65516634 Sorghum bicolor
Sobic.003G329900 0.5kb downstream 0.5kb downstream 500 false Chr03: 65516135-65516634 Sorghum bicolor
Sobic.003G329900 1.0kb upstream 1.0kb upstream 4163 true Chr03: 65511972-65516134 Sorghum bicolor
Sobic.003G329900 1.0kb upstream 1.0kb upstream 1000 false Chr03: 65511972-65512971 Sorghum bicolor
Sobic.003G329900 1.0kb downstream 1.0kb downstream 4163 true Chr03: 65512972-65517134 Sorghum bicolor
Sobic.003G329900 1.0kb downstream 1.0kb downstream 1000 false Chr03: 65516135-65517134 Sorghum bicolor
Sobic.003G329900 2.0kb upstream 2.0kb upstream 5163 true Chr03: 65510972-65516134 Sorghum bicolor
Sobic.003G329900 2.0kb upstream 2.0kb upstream 2000 false Chr03: 65510972-65512971 Sorghum bicolor
Sobic.003G329900 2.0kb downstream 2.0kb downstream 5163 true Chr03: 65512972-65518134 Sorghum bicolor
Sobic.003G329900 2.0kb downstream 2.0kb downstream 2000 false Chr03: 65516135-65518134 Sorghum bicolor
Sobic.003G329900 5.0kb upstream 5.0kb upstream 8163 true Chr03: 65507972-65516134 Sorghum bicolor
Sobic.003G329900 5.0kb upstream 5.0kb upstream 5000 false Chr03: 65507972-65512971 Sorghum bicolor
Sobic.003G329900 5.0kb downstream 5.0kb downstream 8163 true Chr03: 65512972-65521134 Sorghum bicolor
Sobic.003G329900 5.0kb downstream 5.0kb downstream 5000 false Chr03: 65516135-65521134 Sorghum bicolor
Sobic.003G329900 10.0kb upstream 10.0kb upstream 13163 true Chr03: 65502972-65516134 Sorghum bicolor
Sobic.003G329900 10.0kb upstream 10.0kb upstream 10000 false Chr03: 65502972-65512971 Sorghum bicolor
Sobic.003G329900 10.0kb downstream 10.0kb downstream 13163 true Chr03: 65512972-65526134 Sorghum bicolor
Sobic.003G329900 10.0kb downstream 10.0kb downstream 10000 false Chr03: 65516135-65526134 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122188114 5267 Panicoideae View MSA
124570704 5269 Grass View MSA
122042852 5273 Angiosperm View MSA
121347258 5274 Embryophyte View MSA
123427019 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.665       Low
cufflinks 6.181        
cufflinks 6.756        
cufflinks 4.281        
cufflinks 4.817        
cufflinks 10.32       High
cufflinks 7.182        
cufflinks 6.724        
cufflinks 3.736        
cufflinks 4.608        
cufflinks 2.051       Low
cufflinks 2.654        
cufflinks 7.062        
cufflinks 2.946        
cufflinks 7.861       High
cufflinks 7.495        
cufflinks 6.636        
cufflinks 8.011       High
cufflinks 4.498        
cufflinks 4.942        
cufflinks 4.596        
cufflinks 2.37        
cufflinks 2.686        
cufflinks 2.658        
cufflinks 4.924        
cufflinks 6.664     High  
cufflinks 2.8        
cufflinks 0.369       Low
cufflinks 8.098       High
cufflinks 5.707        

0 Strain