Gene : Sobic.003G290000 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR13697//PTHR13697:SF34 - PHOSPHOFRUCTOKINASE // SUBFAMILY NOT NAMED Genomic Order:  3051
Name:  ? Sobic.003G290000 Secondary Identifier:  ? PAC:37915950
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Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor ANAEROFRUCAT-PWY Sorghum bicolor pathologic  
Sbicolor ANAGLYCOLYSIS-PWY Sorghum bicolor pathologic  
Sbicolor PWY-1042 Sorghum bicolor pathologic  
Sbicolor PWY-5464 Sorghum bicolor pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.003G290000 0.5kb upstream 0.5kb upstream 7081 true Chr03: 62241321-62248401 Sorghum bicolor
Sobic.003G290000 0.5kb upstream 0.5kb upstream 500 false Chr03: 62247902-62248401 Sorghum bicolor
Sobic.003G290000 0.5kb downstream 0.5kb downstream 7081 true Chr03: 62240821-62247901 Sorghum bicolor
Sobic.003G290000 0.5kb downstream 0.5kb downstream 500 false Chr03: 62240821-62241320 Sorghum bicolor
Sobic.003G290000 1.0kb upstream 1.0kb upstream 7581 true Chr03: 62241321-62248901 Sorghum bicolor
Sobic.003G290000 1.0kb upstream 1.0kb upstream 1000 false Chr03: 62247902-62248901 Sorghum bicolor
Sobic.003G290000 1.0kb downstream 1.0kb downstream 7581 true Chr03: 62240321-62247901 Sorghum bicolor
Sobic.003G290000 1.0kb downstream 1.0kb downstream 1000 false Chr03: 62240321-62241320 Sorghum bicolor
Sobic.003G290000 2.0kb upstream 2.0kb upstream 8581 true Chr03: 62241321-62249901 Sorghum bicolor
Sobic.003G290000 2.0kb upstream 2.0kb upstream 2000 false Chr03: 62247902-62249901 Sorghum bicolor
Sobic.003G290000 2.0kb downstream 2.0kb downstream 8581 true Chr03: 62239321-62247901 Sorghum bicolor
Sobic.003G290000 2.0kb downstream 2.0kb downstream 2000 false Chr03: 62239321-62241320 Sorghum bicolor
Sobic.003G290000 5.0kb upstream 5.0kb upstream 11581 true Chr03: 62241321-62252901 Sorghum bicolor
Sobic.003G290000 5.0kb upstream 5.0kb upstream 5000 false Chr03: 62247902-62252901 Sorghum bicolor
Sobic.003G290000 5.0kb downstream 5.0kb downstream 11581 true Chr03: 62236321-62247901 Sorghum bicolor
Sobic.003G290000 5.0kb downstream 5.0kb downstream 5000 false Chr03: 62236321-62241320 Sorghum bicolor
Sobic.003G290000 10.0kb upstream 10.0kb upstream 16581 true Chr03: 62241321-62257901 Sorghum bicolor
Sobic.003G290000 10.0kb upstream 10.0kb upstream 10000 false Chr03: 62247902-62257901 Sorghum bicolor
Sobic.003G290000 10.0kb downstream 10.0kb downstream 16581 true Chr03: 62231321-62247901 Sorghum bicolor
Sobic.003G290000 10.0kb downstream 10.0kb downstream 10000 false Chr03: 62231321-62241320 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122176673 5267 Panicoideae View MSA
124588642 5269 Grass View MSA
122042097 5273 Angiosperm View MSA
121349898 5274 Embryophyte View MSA
123428795 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.458        
cufflinks 1.241       Low
cufflinks 2.763        
cufflinks 5.182        
cufflinks 11.606        
cufflinks 1.771       Low
cufflinks 5.846        
cufflinks 2.411       Low
cufflinks 6.317        
cufflinks 7.93        
cufflinks 10.539        
cufflinks 9.99        
cufflinks 6.432        
cufflinks 13.376     High High
cufflinks 3.098        
cufflinks 2.241       Low
cufflinks 6.34        
cufflinks 6.579        
cufflinks 2.56       Low
cufflinks 7.0        
cufflinks 10.715        
cufflinks 12.085     High  
cufflinks 12.155     High  
cufflinks 11.87     High  
cufflinks 1.359       Low
cufflinks 1.636       Low
cufflinks 8.366        
cufflinks 2.42       Low
cufflinks 5.563        
cufflinks 3.458        

0 Strain