Gene : Sobic.003G292100 S. bicolor v3.1.1
Defline:  (1 of 24) K01051 - pectinesterase (E3.1.1.11) Genomic Order:  3074
Name:  ? Sobic.003G292100 Secondary Identifier:  ? PAC:37913109
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor PWY-1081 Sorghum bicolor pathologic  

Genomics

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Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.003G292100 0.5kb upstream 0.5kb upstream 4628 true Chr03: 62465693-62470320 Sorghum bicolor
Sobic.003G292100 0.5kb upstream 0.5kb upstream 500 false Chr03: 62469821-62470320 Sorghum bicolor
Sobic.003G292100 0.5kb downstream 0.5kb downstream 4628 true Chr03: 62465193-62469820 Sorghum bicolor
Sobic.003G292100 0.5kb downstream 0.5kb downstream 500 false Chr03: 62465193-62465692 Sorghum bicolor
Sobic.003G292100 1.0kb upstream 1.0kb upstream 5128 true Chr03: 62465693-62470820 Sorghum bicolor
Sobic.003G292100 1.0kb upstream 1.0kb upstream 1000 false Chr03: 62469821-62470820 Sorghum bicolor
Sobic.003G292100 1.0kb downstream 1.0kb downstream 5128 true Chr03: 62464693-62469820 Sorghum bicolor
Sobic.003G292100 1.0kb downstream 1.0kb downstream 1000 false Chr03: 62464693-62465692 Sorghum bicolor
Sobic.003G292100 2.0kb upstream 2.0kb upstream 6128 true Chr03: 62465693-62471820 Sorghum bicolor
Sobic.003G292100 2.0kb upstream 2.0kb upstream 2000 false Chr03: 62469821-62471820 Sorghum bicolor
Sobic.003G292100 2.0kb downstream 2.0kb downstream 6128 true Chr03: 62463693-62469820 Sorghum bicolor
Sobic.003G292100 2.0kb downstream 2.0kb downstream 2000 false Chr03: 62463693-62465692 Sorghum bicolor
Sobic.003G292100 5.0kb upstream 5.0kb upstream 9128 true Chr03: 62465693-62474820 Sorghum bicolor
Sobic.003G292100 5.0kb upstream 5.0kb upstream 5000 false Chr03: 62469821-62474820 Sorghum bicolor
Sobic.003G292100 5.0kb downstream 5.0kb downstream 9128 true Chr03: 62460693-62469820 Sorghum bicolor
Sobic.003G292100 5.0kb downstream 5.0kb downstream 5000 false Chr03: 62460693-62465692 Sorghum bicolor
Sobic.003G292100 10.0kb upstream 10.0kb upstream 14128 true Chr03: 62465693-62479820 Sorghum bicolor
Sobic.003G292100 10.0kb upstream 10.0kb upstream 10000 false Chr03: 62469821-62479820 Sorghum bicolor
Sobic.003G292100 10.0kb downstream 10.0kb downstream 14128 true Chr03: 62455693-62469820 Sorghum bicolor
Sobic.003G292100 10.0kb downstream 10.0kb downstream 10000 false Chr03: 62455693-62465692 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122199126 5267 Panicoideae View MSA
124579369 5269 Grass View MSA
122041979 5273 Angiosperm View MSA
121350573 5274 Embryophyte View MSA
123381802 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.113        
cufflinks 0.001     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.224       High
cufflinks 0.001     Low Low
cufflinks 0.029     Low  
cufflinks 0.006     Low  
cufflinks 0.003     Low Low
cufflinks 0.012     Low  
cufflinks 0.13        
cufflinks 0.087     Low  
cufflinks 0.012     Low  
cufflinks 0.186       High
cufflinks 0.043     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.024     Low  
cufflinks 0.026     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.031     Low  
cufflinks 0.219       High
cufflinks 0.091     Low  
cufflinks 0.062     Low  
cufflinks 0.071     Low  
cufflinks 0.001     Low Low
cufflinks 0.001     Low Low
cufflinks 0.141        
cufflinks 0.091        
cufflinks 0.034     Low  
cufflinks 0.054     Low  

0 Strain