Gene : Sobic.003G293600 S. bicolor v3.1.1
Defline:  (1 of 4) K17913 - carlactone synthase / all-trans-10'-apo-beta-carotenal 13,14-cleaving dioxygenase (CCD8) Genomic Order:  3092
Name:  ? Sobic.003G293600 Secondary Identifier:  ? PAC:37916436
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor PWY-7101 Sorghum bicolor pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.003G293600 0.5kb upstream 0.5kb upstream 4560 true Chr03: 62602964-62607523 Sorghum bicolor
Sobic.003G293600 0.5kb upstream 0.5kb upstream 500 false Chr03: 62607024-62607523 Sorghum bicolor
Sobic.003G293600 0.5kb downstream 0.5kb downstream 4560 true Chr03: 62602464-62607023 Sorghum bicolor
Sobic.003G293600 0.5kb downstream 0.5kb downstream 500 false Chr03: 62602464-62602963 Sorghum bicolor
Sobic.003G293600 1.0kb upstream 1.0kb upstream 5060 true Chr03: 62602964-62608023 Sorghum bicolor
Sobic.003G293600 1.0kb upstream 1.0kb upstream 1000 false Chr03: 62607024-62608023 Sorghum bicolor
Sobic.003G293600 1.0kb downstream 1.0kb downstream 5060 true Chr03: 62601964-62607023 Sorghum bicolor
Sobic.003G293600 1.0kb downstream 1.0kb downstream 1000 false Chr03: 62601964-62602963 Sorghum bicolor
Sobic.003G293600 2.0kb upstream 2.0kb upstream 6060 true Chr03: 62602964-62609023 Sorghum bicolor
Sobic.003G293600 2.0kb upstream 2.0kb upstream 2000 false Chr03: 62607024-62609023 Sorghum bicolor
Sobic.003G293600 2.0kb downstream 2.0kb downstream 6060 true Chr03: 62600964-62607023 Sorghum bicolor
Sobic.003G293600 2.0kb downstream 2.0kb downstream 2000 false Chr03: 62600964-62602963 Sorghum bicolor
Sobic.003G293600 5.0kb upstream 5.0kb upstream 9060 true Chr03: 62602964-62612023 Sorghum bicolor
Sobic.003G293600 5.0kb upstream 5.0kb upstream 5000 false Chr03: 62607024-62612023 Sorghum bicolor
Sobic.003G293600 5.0kb downstream 5.0kb downstream 9060 true Chr03: 62597964-62607023 Sorghum bicolor
Sobic.003G293600 5.0kb downstream 5.0kb downstream 5000 false Chr03: 62597964-62602963 Sorghum bicolor
Sobic.003G293600 10.0kb upstream 10.0kb upstream 14060 true Chr03: 62602964-62617023 Sorghum bicolor
Sobic.003G293600 10.0kb upstream 10.0kb upstream 10000 false Chr03: 62607024-62617023 Sorghum bicolor
Sobic.003G293600 10.0kb downstream 10.0kb downstream 14060 true Chr03: 62592964-62607023 Sorghum bicolor
Sobic.003G293600 10.0kb downstream 10.0kb downstream 10000 false Chr03: 62592964-62602963 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122185928 5267 Panicoideae View MSA
124587364 5269 Grass View MSA
122048984 5273 Angiosperm View MSA
123428919 5275 Viridiplantae View MSA
121344649 5274 Embryophyte View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.253        
cufflinks 0.015     Low Low
cufflinks 0.008     Low Low
cufflinks 0.246        
cufflinks 2.555        
cufflinks 0.626        
cufflinks 0.972        
cufflinks 0.313        
cufflinks 6.881        
cufflinks 2.738        
cufflinks 13.729     High High
cufflinks 23.237     High High
cufflinks 5.402        
cufflinks 1.636        
cufflinks 0.231        
cufflinks 0.014     Low Low
cufflinks 0.84        
cufflinks 0.561        
cufflinks 0.011     Low Low
cufflinks 2.395        
cufflinks 0.74        
cufflinks 5.372        
cufflinks 13.202     High High
cufflinks 13.265     High High
cufflinks 0.011     Low Low
cufflinks 0.041       Low
cufflinks 20.308     High High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.091        
cufflinks 0.046     Low Low

0 Strain