Gene : Sobic.003G297700 S. bicolor v3.1.1
Defline:  (1 of 1) 2.4.1.182 - Lipid-A-disaccharide synthase Genomic Order:  3138
Name:  ? Sobic.003G297700 Secondary Identifier:  ? PAC:37914068
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor NAGLIPASYN-PWY Sorghum bicolor pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.003G297700 0.5kb upstream 0.5kb upstream 7839 true Chr03: 62943538-62951376 Sorghum bicolor
Sobic.003G297700 0.5kb upstream 0.5kb upstream 500 false Chr03: 62950877-62951376 Sorghum bicolor
Sobic.003G297700 0.5kb downstream 0.5kb downstream 7839 true Chr03: 62943038-62950876 Sorghum bicolor
Sobic.003G297700 0.5kb downstream 0.5kb downstream 500 false Chr03: 62943038-62943537 Sorghum bicolor
Sobic.003G297700 1.0kb upstream 1.0kb upstream 8339 true Chr03: 62943538-62951876 Sorghum bicolor
Sobic.003G297700 1.0kb upstream 1.0kb upstream 1000 false Chr03: 62950877-62951876 Sorghum bicolor
Sobic.003G297700 1.0kb downstream 1.0kb downstream 8339 true Chr03: 62942538-62950876 Sorghum bicolor
Sobic.003G297700 1.0kb downstream 1.0kb downstream 1000 false Chr03: 62942538-62943537 Sorghum bicolor
Sobic.003G297700 2.0kb upstream 2.0kb upstream 9339 true Chr03: 62943538-62952876 Sorghum bicolor
Sobic.003G297700 2.0kb upstream 2.0kb upstream 2000 false Chr03: 62950877-62952876 Sorghum bicolor
Sobic.003G297700 2.0kb downstream 2.0kb downstream 9339 true Chr03: 62941538-62950876 Sorghum bicolor
Sobic.003G297700 2.0kb downstream 2.0kb downstream 2000 false Chr03: 62941538-62943537 Sorghum bicolor
Sobic.003G297700 5.0kb upstream 5.0kb upstream 12339 true Chr03: 62943538-62955876 Sorghum bicolor
Sobic.003G297700 5.0kb upstream 5.0kb upstream 5000 false Chr03: 62950877-62955876 Sorghum bicolor
Sobic.003G297700 5.0kb downstream 5.0kb downstream 12339 true Chr03: 62938538-62950876 Sorghum bicolor
Sobic.003G297700 5.0kb downstream 5.0kb downstream 5000 false Chr03: 62938538-62943537 Sorghum bicolor
Sobic.003G297700 10.0kb upstream 10.0kb upstream 17339 true Chr03: 62943538-62960876 Sorghum bicolor
Sobic.003G297700 10.0kb upstream 10.0kb upstream 10000 false Chr03: 62950877-62960876 Sorghum bicolor
Sobic.003G297700 10.0kb downstream 10.0kb downstream 17339 true Chr03: 62933538-62950876 Sorghum bicolor
Sobic.003G297700 10.0kb downstream 10.0kb downstream 10000 false Chr03: 62933538-62943537 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122180013 5267 Panicoideae View MSA
124573921 5269 Grass View MSA
122042549 5273 Angiosperm View MSA
121345953 5274 Embryophyte View MSA
123380297 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.602        
cufflinks 0.094       Low
cufflinks 0.202        
cufflinks 0.366        
cufflinks 1.007       High
cufflinks 0.505        
cufflinks 0.28        
cufflinks 0.091       Low
cufflinks 0.933       High
cufflinks 0.924       High
cufflinks 0.42        
cufflinks 0.464        
cufflinks 0.659        
cufflinks 0.38        
cufflinks 0.541        
cufflinks 0.17       Low
cufflinks 0.239        
cufflinks 0.244        
cufflinks 0.146       Low
cufflinks 0.258        
cufflinks 2.304       High
cufflinks 0.505        
cufflinks 0.368        
cufflinks 0.422        
cufflinks 0.107       Low
cufflinks 0.088       Low
cufflinks 0.57        
cufflinks 0.496        
cufflinks 0.203        
cufflinks 0.523        

0 Strain