Gene : Sobic.003G300300 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR22792//PTHR22792:SF58 - LUPUS LA PROTEIN-RELATED // LA-RELATED PROTEIN 6A Genomic Order:  3164
Name:  ? Sobic.003G300300 Secondary Identifier:  ? PAC:37916296
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.003G300300 0.5kb upstream 0.5kb upstream 7532 true Chr03: 63130339-63137870 Sorghum bicolor
Sobic.003G300300 0.5kb upstream 0.5kb upstream 500 false Chr03: 63137371-63137870 Sorghum bicolor
Sobic.003G300300 0.5kb downstream 0.5kb downstream 7532 true Chr03: 63129839-63137370 Sorghum bicolor
Sobic.003G300300 0.5kb downstream 0.5kb downstream 500 false Chr03: 63129839-63130338 Sorghum bicolor
Sobic.003G300300 1.0kb upstream 1.0kb upstream 8032 true Chr03: 63130339-63138370 Sorghum bicolor
Sobic.003G300300 1.0kb upstream 1.0kb upstream 1000 false Chr03: 63137371-63138370 Sorghum bicolor
Sobic.003G300300 1.0kb downstream 1.0kb downstream 8032 true Chr03: 63129339-63137370 Sorghum bicolor
Sobic.003G300300 1.0kb downstream 1.0kb downstream 1000 false Chr03: 63129339-63130338 Sorghum bicolor
Sobic.003G300300 2.0kb upstream 2.0kb upstream 9032 true Chr03: 63130339-63139370 Sorghum bicolor
Sobic.003G300300 2.0kb upstream 2.0kb upstream 2000 false Chr03: 63137371-63139370 Sorghum bicolor
Sobic.003G300300 2.0kb downstream 2.0kb downstream 9032 true Chr03: 63128339-63137370 Sorghum bicolor
Sobic.003G300300 2.0kb downstream 2.0kb downstream 2000 false Chr03: 63128339-63130338 Sorghum bicolor
Sobic.003G300300 5.0kb upstream 5.0kb upstream 12032 true Chr03: 63130339-63142370 Sorghum bicolor
Sobic.003G300300 5.0kb upstream 5.0kb upstream 5000 false Chr03: 63137371-63142370 Sorghum bicolor
Sobic.003G300300 5.0kb downstream 5.0kb downstream 12032 true Chr03: 63125339-63137370 Sorghum bicolor
Sobic.003G300300 5.0kb downstream 5.0kb downstream 5000 false Chr03: 63125339-63130338 Sorghum bicolor
Sobic.003G300300 10.0kb upstream 10.0kb upstream 17032 true Chr03: 63130339-63147370 Sorghum bicolor
Sobic.003G300300 10.0kb upstream 10.0kb upstream 10000 false Chr03: 63137371-63147370 Sorghum bicolor
Sobic.003G300300 10.0kb downstream 10.0kb downstream 17032 true Chr03: 63120339-63137370 Sorghum bicolor
Sobic.003G300300 10.0kb downstream 10.0kb downstream 10000 false Chr03: 63120339-63130338 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122183555 5267 Panicoideae View MSA
124572781 5269 Grass View MSA
122043814 5273 Angiosperm View MSA
121349510 5274 Embryophyte View MSA
123427383 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.384       High
cufflinks 1.109       Low
cufflinks 5.182        
cufflinks 7.432        
cufflinks 7.901        
cufflinks 12.299       High
cufflinks 2.979        
cufflinks 0.826       Low
cufflinks 7.653        
cufflinks 6.7        
cufflinks 2.884        
cufflinks 3.966        
cufflinks 6.127        
cufflinks 3.665        
cufflinks 5.571        
cufflinks 3.397        
cufflinks 2.99        
cufflinks 3.484        
cufflinks 3.283        
cufflinks 4.603        
cufflinks 8.583       High
cufflinks 4.489        
cufflinks 3.998        
cufflinks 3.745        
cufflinks 1.219       Low
cufflinks 0.826       Low
cufflinks 4.642        
cufflinks 14.579     High High
cufflinks 1.684       Low
cufflinks 6.395        

0 Strain