Gene : Sobic.003G301500 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR18901//PTHR18901:SF37 - 2-DEOXYGLUCOSE-6-PHOSPHATE PHOSPHATASE 2 // SUBFAMILY NOT NAMED Genomic Order:  3177
Name:  ? Sobic.003G301500 Secondary Identifier:  ? PAC:37915207
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor RIBOSYN2-PWY Sorghum bicolor pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.003G301500 0.5kb upstream 0.5kb upstream 4741 true Chr03: 63221899-63226639 Sorghum bicolor
Sobic.003G301500 0.5kb upstream 0.5kb upstream 500 false Chr03: 63226140-63226639 Sorghum bicolor
Sobic.003G301500 0.5kb downstream 0.5kb downstream 4741 true Chr03: 63221399-63226139 Sorghum bicolor
Sobic.003G301500 0.5kb downstream 0.5kb downstream 500 false Chr03: 63221399-63221898 Sorghum bicolor
Sobic.003G301500 1.0kb upstream 1.0kb upstream 5241 true Chr03: 63221899-63227139 Sorghum bicolor
Sobic.003G301500 1.0kb upstream 1.0kb upstream 1000 false Chr03: 63226140-63227139 Sorghum bicolor
Sobic.003G301500 1.0kb downstream 1.0kb downstream 5241 true Chr03: 63220899-63226139 Sorghum bicolor
Sobic.003G301500 1.0kb downstream 1.0kb downstream 1000 false Chr03: 63220899-63221898 Sorghum bicolor
Sobic.003G301500 2.0kb upstream 2.0kb upstream 6241 true Chr03: 63221899-63228139 Sorghum bicolor
Sobic.003G301500 2.0kb upstream 2.0kb upstream 2000 false Chr03: 63226140-63228139 Sorghum bicolor
Sobic.003G301500 2.0kb downstream 2.0kb downstream 6241 true Chr03: 63219899-63226139 Sorghum bicolor
Sobic.003G301500 2.0kb downstream 2.0kb downstream 2000 false Chr03: 63219899-63221898 Sorghum bicolor
Sobic.003G301500 5.0kb upstream 5.0kb upstream 9241 true Chr03: 63221899-63231139 Sorghum bicolor
Sobic.003G301500 5.0kb upstream 5.0kb upstream 5000 false Chr03: 63226140-63231139 Sorghum bicolor
Sobic.003G301500 5.0kb downstream 5.0kb downstream 9241 true Chr03: 63216899-63226139 Sorghum bicolor
Sobic.003G301500 5.0kb downstream 5.0kb downstream 5000 false Chr03: 63216899-63221898 Sorghum bicolor
Sobic.003G301500 10.0kb upstream 10.0kb upstream 14241 true Chr03: 63221899-63236139 Sorghum bicolor
Sobic.003G301500 10.0kb upstream 10.0kb upstream 10000 false Chr03: 63226140-63236139 Sorghum bicolor
Sobic.003G301500 10.0kb downstream 10.0kb downstream 14241 true Chr03: 63211899-63226139 Sorghum bicolor
Sobic.003G301500 10.0kb downstream 10.0kb downstream 10000 false Chr03: 63211899-63221898 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122177387 5267 Panicoideae View MSA
124570506 5269 Grass View MSA
122043634 5273 Angiosperm View MSA
121345579 5274 Embryophyte View MSA
123427894 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.093       Low
cufflinks 24.379     High High
cufflinks 2.695        
cufflinks 7.493        
cufflinks 0.964       Low
cufflinks 3.707        
cufflinks 26.749     High High
cufflinks 26.695     High High
cufflinks 5.284        
cufflinks 6.997        
cufflinks 12.539     High  
cufflinks 5.683        
cufflinks 5.044        
cufflinks 5.46        
cufflinks 2.156        
cufflinks 6.271        
cufflinks 29.456     High High
cufflinks 23.476     High High
cufflinks 5.542        
cufflinks 4.271        
cufflinks 0.649       Low
cufflinks 5.487        
cufflinks 9.724        
cufflinks 8.365        
cufflinks 20.237     High High
cufflinks 35.706     High High
cufflinks 3.835        
cufflinks 0.021     Low Low
cufflinks 9.627        
cufflinks 1.116        

0 Strain