Gene : Sobic.003G379800 S. bicolor v3.1.1
Defline:  (1 of 2) PTHR23315//PTHR23315:SF117 - BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAINING // SUBFAMILY NOT NAMED Genomic Order:  3995
Name:  ? Sobic.003G379800 Secondary Identifier:  ? PAC:37912520
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor PWY-7511 Sorghum bicolor pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.003G379800 0.5kb upstream 0.5kb upstream 4492 true Chr03: 69362460-69366951 Sorghum bicolor
Sobic.003G379800 0.5kb upstream 0.5kb upstream 500 false Chr03: 69362460-69362959 Sorghum bicolor
Sobic.003G379800 0.5kb downstream 0.5kb downstream 4492 true Chr03: 69362960-69367451 Sorghum bicolor
Sobic.003G379800 0.5kb downstream 0.5kb downstream 500 false Chr03: 69366952-69367451 Sorghum bicolor
Sobic.003G379800 1.0kb upstream 1.0kb upstream 4992 true Chr03: 69361960-69366951 Sorghum bicolor
Sobic.003G379800 1.0kb upstream 1.0kb upstream 1000 false Chr03: 69361960-69362959 Sorghum bicolor
Sobic.003G379800 1.0kb downstream 1.0kb downstream 4992 true Chr03: 69362960-69367951 Sorghum bicolor
Sobic.003G379800 1.0kb downstream 1.0kb downstream 1000 false Chr03: 69366952-69367951 Sorghum bicolor
Sobic.003G379800 2.0kb upstream 2.0kb upstream 5992 true Chr03: 69360960-69366951 Sorghum bicolor
Sobic.003G379800 2.0kb upstream 2.0kb upstream 2000 false Chr03: 69360960-69362959 Sorghum bicolor
Sobic.003G379800 2.0kb downstream 2.0kb downstream 5992 true Chr03: 69362960-69368951 Sorghum bicolor
Sobic.003G379800 2.0kb downstream 2.0kb downstream 2000 false Chr03: 69366952-69368951 Sorghum bicolor
Sobic.003G379800 5.0kb upstream 5.0kb upstream 8992 true Chr03: 69357960-69366951 Sorghum bicolor
Sobic.003G379800 5.0kb upstream 5.0kb upstream 5000 false Chr03: 69357960-69362959 Sorghum bicolor
Sobic.003G379800 5.0kb downstream 5.0kb downstream 8992 true Chr03: 69362960-69371951 Sorghum bicolor
Sobic.003G379800 5.0kb downstream 5.0kb downstream 5000 false Chr03: 69366952-69371951 Sorghum bicolor
Sobic.003G379800 10.0kb upstream 10.0kb upstream 13992 true Chr03: 69352960-69366951 Sorghum bicolor
Sobic.003G379800 10.0kb upstream 10.0kb upstream 10000 false Chr03: 69352960-69362959 Sorghum bicolor
Sobic.003G379800 10.0kb downstream 10.0kb downstream 13992 true Chr03: 69362960-69376951 Sorghum bicolor
Sobic.003G379800 10.0kb downstream 10.0kb downstream 10000 false Chr03: 69366952-69376951 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122176885 5267 Panicoideae View MSA
124572302 5269 Grass View MSA
122048814 5273 Angiosperm View MSA
121345933 5274 Embryophyte View MSA
123428864 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.111        
cufflinks 0.801       Low
cufflinks 7.741        
cufflinks 9.442        
cufflinks 12.251        
cufflinks 3.244        
cufflinks 3.917        
cufflinks 2.296       Low
cufflinks 5.576        
cufflinks 5.887        
cufflinks 20.226     High High
cufflinks 13.865     High  
cufflinks 10.665        
cufflinks 13.144     High  
cufflinks 7.284        
cufflinks 2.437       Low
cufflinks 3.37        
cufflinks 3.378        
cufflinks 5.461        
cufflinks 4.886        
cufflinks 15.561     High High
cufflinks 8.944        
cufflinks 12.206     High  
cufflinks 12.223     High  
cufflinks 1.193       Low
cufflinks 0.708       Low
cufflinks 28.968     High High
cufflinks 0.794       Low
cufflinks 2.393       Low
cufflinks 10.879        

0 Strain