Gene : Sobic.001G021000 S. bicolor v3.1.1
Defline:  (1 of 2) 6.3.4.21 - Nicotinate phosphoribosyltransferase / Nicotinic acid phosphoribosyltransferase Genomic Order:  211
Name:  ? Sobic.001G021000 Secondary Identifier:  ? PAC:37943170
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor PWY-5381 Sorghum bicolor pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.001G021000 0.5kb upstream 0.5kb upstream 8662 true Chr01: 1729643-1738304 Sorghum bicolor
Sobic.001G021000 0.5kb upstream 0.5kb upstream 500 false Chr01: 1737805-1738304 Sorghum bicolor
Sobic.001G021000 0.5kb downstream 0.5kb downstream 8662 true Chr01: 1729143-1737804 Sorghum bicolor
Sobic.001G021000 0.5kb downstream 0.5kb downstream 500 false Chr01: 1729143-1729642 Sorghum bicolor
Sobic.001G021000 1.0kb upstream 1.0kb upstream 9162 true Chr01: 1729643-1738804 Sorghum bicolor
Sobic.001G021000 1.0kb upstream 1.0kb upstream 1000 false Chr01: 1737805-1738804 Sorghum bicolor
Sobic.001G021000 1.0kb downstream 1.0kb downstream 9162 true Chr01: 1728643-1737804 Sorghum bicolor
Sobic.001G021000 1.0kb downstream 1.0kb downstream 1000 false Chr01: 1728643-1729642 Sorghum bicolor
Sobic.001G021000 2.0kb upstream 2.0kb upstream 10162 true Chr01: 1729643-1739804 Sorghum bicolor
Sobic.001G021000 2.0kb upstream 2.0kb upstream 2000 false Chr01: 1737805-1739804 Sorghum bicolor
Sobic.001G021000 2.0kb downstream 2.0kb downstream 10162 true Chr01: 1727643-1737804 Sorghum bicolor
Sobic.001G021000 2.0kb downstream 2.0kb downstream 2000 false Chr01: 1727643-1729642 Sorghum bicolor
Sobic.001G021000 5.0kb upstream 5.0kb upstream 13162 true Chr01: 1729643-1742804 Sorghum bicolor
Sobic.001G021000 5.0kb upstream 5.0kb upstream 5000 false Chr01: 1737805-1742804 Sorghum bicolor
Sobic.001G021000 5.0kb downstream 5.0kb downstream 13162 true Chr01: 1724643-1737804 Sorghum bicolor
Sobic.001G021000 5.0kb downstream 5.0kb downstream 5000 false Chr01: 1724643-1729642 Sorghum bicolor
Sobic.001G021000 10.0kb upstream 10.0kb upstream 18162 true Chr01: 1729643-1747804 Sorghum bicolor
Sobic.001G021000 10.0kb upstream 10.0kb upstream 10000 false Chr01: 1737805-1747804 Sorghum bicolor
Sobic.001G021000 10.0kb downstream 10.0kb downstream 18162 true Chr01: 1719643-1737804 Sorghum bicolor
Sobic.001G021000 10.0kb downstream 10.0kb downstream 10000 false Chr01: 1719643-1729642 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122182645 5267 Panicoideae View MSA
124588747 5269 Grass View MSA
122047355 5273 Angiosperm View MSA
121346796 5274 Embryophyte View MSA
123425475 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.659       Low
cufflinks 7.057     High High
cufflinks 3.252        
cufflinks 2.431        
cufflinks 2.851        
cufflinks 3.03        
cufflinks 4.064        
cufflinks 6.065       High
cufflinks 4.694        
cufflinks 4.962        
cufflinks 1.355        
cufflinks 1.159       Low
cufflinks 4.59        
cufflinks 1.346       Low
cufflinks 5.659       High
cufflinks 4.567        
cufflinks 4.221        
cufflinks 4.251        
cufflinks 3.934        
cufflinks 3.718        
cufflinks 2.685        
cufflinks 1.247       Low
cufflinks 1.159       Low
cufflinks 1.08       Low
cufflinks 5.267       High
cufflinks 10.203     High High
cufflinks 1.949        
cufflinks 1.428        
cufflinks 2.92        
cufflinks 4.331        

0 Strain