Gene : Sobic.001G021500 S. bicolor v3.1.1
Defline:  (1 of 3) PTHR13301//PTHR13301:SF73 - X-BOX TRANSCRIPTION FACTOR-RELATED // SUBFAMILY NOT NAMED Genomic Order:  216
Name:  ? Sobic.001G021500 Secondary Identifier:  ? PAC:37942165
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor PWY-1001 Sorghum bicolor pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.001G021500 0.5kb upstream 0.5kb upstream 6714 true Chr01: 1770077-1776790 Sorghum bicolor
Sobic.001G021500 0.5kb upstream 0.5kb upstream 500 false Chr01: 1776291-1776790 Sorghum bicolor
Sobic.001G021500 0.5kb downstream 0.5kb downstream 6714 true Chr01: 1769577-1776290 Sorghum bicolor
Sobic.001G021500 0.5kb downstream 0.5kb downstream 500 false Chr01: 1769577-1770076 Sorghum bicolor
Sobic.001G021500 1.0kb upstream 1.0kb upstream 7214 true Chr01: 1770077-1777290 Sorghum bicolor
Sobic.001G021500 1.0kb upstream 1.0kb upstream 1000 false Chr01: 1776291-1777290 Sorghum bicolor
Sobic.001G021500 1.0kb downstream 1.0kb downstream 7214 true Chr01: 1769077-1776290 Sorghum bicolor
Sobic.001G021500 1.0kb downstream 1.0kb downstream 1000 false Chr01: 1769077-1770076 Sorghum bicolor
Sobic.001G021500 2.0kb upstream 2.0kb upstream 8214 true Chr01: 1770077-1778290 Sorghum bicolor
Sobic.001G021500 2.0kb upstream 2.0kb upstream 2000 false Chr01: 1776291-1778290 Sorghum bicolor
Sobic.001G021500 2.0kb downstream 2.0kb downstream 8214 true Chr01: 1768077-1776290 Sorghum bicolor
Sobic.001G021500 2.0kb downstream 2.0kb downstream 2000 false Chr01: 1768077-1770076 Sorghum bicolor
Sobic.001G021500 5.0kb upstream 5.0kb upstream 11214 true Chr01: 1770077-1781290 Sorghum bicolor
Sobic.001G021500 5.0kb upstream 5.0kb upstream 5000 false Chr01: 1776291-1781290 Sorghum bicolor
Sobic.001G021500 5.0kb downstream 5.0kb downstream 11214 true Chr01: 1765077-1776290 Sorghum bicolor
Sobic.001G021500 5.0kb downstream 5.0kb downstream 5000 false Chr01: 1765077-1770076 Sorghum bicolor
Sobic.001G021500 10.0kb upstream 10.0kb upstream 16214 true Chr01: 1770077-1786290 Sorghum bicolor
Sobic.001G021500 10.0kb upstream 10.0kb upstream 10000 false Chr01: 1776291-1786290 Sorghum bicolor
Sobic.001G021500 10.0kb downstream 10.0kb downstream 16214 true Chr01: 1760077-1776290 Sorghum bicolor
Sobic.001G021500 10.0kb downstream 10.0kb downstream 10000 false Chr01: 1760077-1770076 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122177739 5267 Panicoideae View MSA
124582866 5269 Grass View MSA
122048668 5273 Angiosperm View MSA
121351501 5274 Embryophyte View MSA
123382193 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 36.689     High Low
cufflinks 10.418     High Low
cufflinks 64.59     High  
cufflinks 54.544     High  
cufflinks 239.705     High High
cufflinks 49.012     High  
cufflinks 113.664     High  
cufflinks 121.921     High  
cufflinks 62.973     High  
cufflinks 56.762     High  
cufflinks 94.419     High  
cufflinks 104.438     High  
cufflinks 155.845     High  
cufflinks 118.504     High  
cufflinks 149.726     High  
cufflinks 12.541     High Low
cufflinks 127.169     High  
cufflinks 123.189     High  
cufflinks 72.454     High  
cufflinks 133.67     High  
cufflinks 43.433     High  
cufflinks 79.728     High  
cufflinks 114.331     High  
cufflinks 109.782     High  
cufflinks 28.217     High Low
cufflinks 38.055     High Low
cufflinks 109.931     High  
cufflinks 10.081     High Low
cufflinks 204.751     High High
cufflinks 149.174     High  

0 Strain