Gene : Sobic.003G381900 S. bicolor v3.1.1
Defline:  (1 of 1) 2.7.7.60 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase / MEP cytidylyltransferase Genomic Order:  4016
Name:  ? Sobic.003G381900 Secondary Identifier:  ? PAC:37918184
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor PWY-7560 Sorghum bicolor pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.003G381900 0.5kb upstream 0.5kb upstream 3533 true Chr03: 69530364-69533896 Sorghum bicolor
Sobic.003G381900 0.5kb upstream 0.5kb upstream 500 false Chr03: 69530364-69530863 Sorghum bicolor
Sobic.003G381900 0.5kb downstream 0.5kb downstream 3533 true Chr03: 69530864-69534396 Sorghum bicolor
Sobic.003G381900 0.5kb downstream 0.5kb downstream 500 false Chr03: 69533897-69534396 Sorghum bicolor
Sobic.003G381900 1.0kb upstream 1.0kb upstream 4033 true Chr03: 69529864-69533896 Sorghum bicolor
Sobic.003G381900 1.0kb upstream 1.0kb upstream 1000 false Chr03: 69529864-69530863 Sorghum bicolor
Sobic.003G381900 1.0kb downstream 1.0kb downstream 4033 true Chr03: 69530864-69534896 Sorghum bicolor
Sobic.003G381900 1.0kb downstream 1.0kb downstream 1000 false Chr03: 69533897-69534896 Sorghum bicolor
Sobic.003G381900 2.0kb upstream 2.0kb upstream 5033 true Chr03: 69528864-69533896 Sorghum bicolor
Sobic.003G381900 2.0kb upstream 2.0kb upstream 2000 false Chr03: 69528864-69530863 Sorghum bicolor
Sobic.003G381900 2.0kb downstream 2.0kb downstream 5033 true Chr03: 69530864-69535896 Sorghum bicolor
Sobic.003G381900 2.0kb downstream 2.0kb downstream 2000 false Chr03: 69533897-69535896 Sorghum bicolor
Sobic.003G381900 5.0kb upstream 5.0kb upstream 8033 true Chr03: 69525864-69533896 Sorghum bicolor
Sobic.003G381900 5.0kb upstream 5.0kb upstream 5000 false Chr03: 69525864-69530863 Sorghum bicolor
Sobic.003G381900 5.0kb downstream 5.0kb downstream 8033 true Chr03: 69530864-69538896 Sorghum bicolor
Sobic.003G381900 5.0kb downstream 5.0kb downstream 5000 false Chr03: 69533897-69538896 Sorghum bicolor
Sobic.003G381900 10.0kb upstream 10.0kb upstream 13033 true Chr03: 69520864-69533896 Sorghum bicolor
Sobic.003G381900 10.0kb upstream 10.0kb upstream 10000 false Chr03: 69520864-69530863 Sorghum bicolor
Sobic.003G381900 10.0kb downstream 10.0kb downstream 13033 true Chr03: 69530864-69543896 Sorghum bicolor
Sobic.003G381900 10.0kb downstream 10.0kb downstream 10000 false Chr03: 69533897-69543896 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122186908 5267 Panicoideae View MSA
124578057 5269 Grass View MSA
122044265 5273 Angiosperm View MSA
121344499 5274 Embryophyte View MSA
123424809 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.264        
cufflinks 1.929       Low
cufflinks 3.442        
cufflinks 4.203        
cufflinks 2.883        
cufflinks 4.275        
cufflinks 4.781        
cufflinks 5.849       High
cufflinks 4.014        
cufflinks 4.061        
cufflinks 3.314        
cufflinks 3.667        
cufflinks 3.889        
cufflinks 3.461        
cufflinks 3.211        
cufflinks 1.778       Low
cufflinks 5.19        
cufflinks 6.371       High
cufflinks 1.643       Low
cufflinks 4.612        
cufflinks 3.385        
cufflinks 3.979        
cufflinks 4.637        
cufflinks 3.944        
cufflinks 1.951       Low
cufflinks 1.758       Low
cufflinks 5.694       High
cufflinks 1.555       Low
cufflinks 11.045       High
cufflinks 4.444        

0 Strain