Gene : Sobic.001G013900 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR11751//PTHR11751:SF435 - SUBGROUP I AMINOTRANSFERASE RELATED // SUBFAMILY NOT NAMED Genomic Order:  137
Name:  ? Sobic.001G013900 Secondary Identifier:  ? PAC:37941837
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor POLYAMINSYN3-PWY Sorghum bicolor pathologic  
Sbicolor PWY-43 Sorghum bicolor pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.001G013900 0.5kb upstream 0.5kb upstream 5396 true Chr01: 1260956-1266351 Sorghum bicolor
Sobic.001G013900 0.5kb upstream 0.5kb upstream 500 false Chr01: 1260956-1261455 Sorghum bicolor
Sobic.001G013900 0.5kb downstream 0.5kb downstream 5396 true Chr01: 1261456-1266851 Sorghum bicolor
Sobic.001G013900 0.5kb downstream 0.5kb downstream 500 false Chr01: 1266352-1266851 Sorghum bicolor
Sobic.001G013900 1.0kb upstream 1.0kb upstream 5896 true Chr01: 1260456-1266351 Sorghum bicolor
Sobic.001G013900 1.0kb upstream 1.0kb upstream 1000 false Chr01: 1260456-1261455 Sorghum bicolor
Sobic.001G013900 1.0kb downstream 1.0kb downstream 5896 true Chr01: 1261456-1267351 Sorghum bicolor
Sobic.001G013900 1.0kb downstream 1.0kb downstream 1000 false Chr01: 1266352-1267351 Sorghum bicolor
Sobic.001G013900 2.0kb upstream 2.0kb upstream 6896 true Chr01: 1259456-1266351 Sorghum bicolor
Sobic.001G013900 2.0kb upstream 2.0kb upstream 2000 false Chr01: 1259456-1261455 Sorghum bicolor
Sobic.001G013900 2.0kb downstream 2.0kb downstream 6896 true Chr01: 1261456-1268351 Sorghum bicolor
Sobic.001G013900 2.0kb downstream 2.0kb downstream 2000 false Chr01: 1266352-1268351 Sorghum bicolor
Sobic.001G013900 5.0kb upstream 5.0kb upstream 9896 true Chr01: 1256456-1266351 Sorghum bicolor
Sobic.001G013900 5.0kb upstream 5.0kb upstream 5000 false Chr01: 1256456-1261455 Sorghum bicolor
Sobic.001G013900 5.0kb downstream 5.0kb downstream 9896 true Chr01: 1261456-1271351 Sorghum bicolor
Sobic.001G013900 5.0kb downstream 5.0kb downstream 5000 false Chr01: 1266352-1271351 Sorghum bicolor
Sobic.001G013900 10.0kb upstream 10.0kb upstream 14896 true Chr01: 1251456-1266351 Sorghum bicolor
Sobic.001G013900 10.0kb upstream 10.0kb upstream 10000 false Chr01: 1251456-1261455 Sorghum bicolor
Sobic.001G013900 10.0kb downstream 10.0kb downstream 14896 true Chr01: 1261456-1276351 Sorghum bicolor
Sobic.001G013900 10.0kb downstream 10.0kb downstream 10000 false Chr01: 1266352-1276351 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122187424 5267 Panicoideae View MSA
124582148 5269 Grass View MSA
122048497 5273 Angiosperm View MSA
121348486 5274 Embryophyte View MSA
123425712 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.329        
cufflinks 0.064       Low
cufflinks 0.095        
cufflinks 0.107        
cufflinks 0.55       High
cufflinks 0.245        
cufflinks 0.466       High
cufflinks 0.218        
cufflinks 0.265        
cufflinks 0.259        
cufflinks 0.082     Low  
cufflinks 0.11     Low  
cufflinks 0.171        
cufflinks 0.08     Low Low
cufflinks 0.254        
cufflinks 0.068     Low Low
cufflinks 0.499       High
cufflinks 0.533       High
cufflinks 0.088     Low  
cufflinks 0.369        
cufflinks 1.05       High
cufflinks 0.093     Low  
cufflinks 0.108        
cufflinks 0.123        
cufflinks 0.043     Low Low
cufflinks 0.056       Low
cufflinks 0.087     Low  
cufflinks 0.138        
cufflinks 0.891       High
cufflinks 0.407       High

0 Strain