Gene : Sobic.001G014900 S. bicolor v3.1.1
Defline:  (1 of 1) 6.2.1.20 - Long-chain-fatty-acid--[acyl-carrier-protein] ligase / Acyl-[acyl-carrier-protein] synthetase Genomic Order:  147
Name:  ? Sobic.001G014900 Secondary Identifier:  ? PAC:37941065
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor PWY-6622 Sorghum bicolor pathologic  

Genomics

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Gene Structure Displayer

Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.001G014900 0.5kb upstream 0.5kb upstream 10002 true Chr01: 1330578-1340579 Sorghum bicolor
Sobic.001G014900 0.5kb upstream 0.5kb upstream 500 false Chr01: 1330578-1331077 Sorghum bicolor
Sobic.001G014900 0.5kb downstream 0.5kb downstream 10002 true Chr01: 1331078-1341079 Sorghum bicolor
Sobic.001G014900 0.5kb downstream 0.5kb downstream 500 false Chr01: 1340580-1341079 Sorghum bicolor
Sobic.001G014900 1.0kb upstream 1.0kb upstream 10502 true Chr01: 1330078-1340579 Sorghum bicolor
Sobic.001G014900 1.0kb upstream 1.0kb upstream 1000 false Chr01: 1330078-1331077 Sorghum bicolor
Sobic.001G014900 1.0kb downstream 1.0kb downstream 10502 true Chr01: 1331078-1341579 Sorghum bicolor
Sobic.001G014900 1.0kb downstream 1.0kb downstream 1000 false Chr01: 1340580-1341579 Sorghum bicolor
Sobic.001G014900 2.0kb upstream 2.0kb upstream 11502 true Chr01: 1329078-1340579 Sorghum bicolor
Sobic.001G014900 2.0kb upstream 2.0kb upstream 2000 false Chr01: 1329078-1331077 Sorghum bicolor
Sobic.001G014900 2.0kb downstream 2.0kb downstream 11502 true Chr01: 1331078-1342579 Sorghum bicolor
Sobic.001G014900 2.0kb downstream 2.0kb downstream 2000 false Chr01: 1340580-1342579 Sorghum bicolor
Sobic.001G014900 5.0kb upstream 5.0kb upstream 14502 true Chr01: 1326078-1340579 Sorghum bicolor
Sobic.001G014900 5.0kb upstream 5.0kb upstream 5000 false Chr01: 1326078-1331077 Sorghum bicolor
Sobic.001G014900 5.0kb downstream 5.0kb downstream 14502 true Chr01: 1331078-1345579 Sorghum bicolor
Sobic.001G014900 5.0kb downstream 5.0kb downstream 5000 false Chr01: 1340580-1345579 Sorghum bicolor
Sobic.001G014900 10.0kb upstream 10.0kb upstream 19502 true Chr01: 1321078-1340579 Sorghum bicolor
Sobic.001G014900 10.0kb upstream 10.0kb upstream 10000 false Chr01: 1321078-1331077 Sorghum bicolor
Sobic.001G014900 10.0kb downstream 10.0kb downstream 19502 true Chr01: 1331078-1350579 Sorghum bicolor
Sobic.001G014900 10.0kb downstream 10.0kb downstream 10000 false Chr01: 1340580-1350579 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122182731 5267 Panicoideae View MSA
124571793 5269 Grass View MSA
122041588 5273 Angiosperm View MSA
121344484 5274 Embryophyte View MSA
123427454 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.274       Low
cufflinks 2.505        
cufflinks 2.717       High
cufflinks 2.838       High
cufflinks 1.675        
cufflinks 1.703        
cufflinks 2.135        
cufflinks 1.991        
cufflinks 1.442        
cufflinks 1.801        
cufflinks 1.461        
cufflinks 2.199        
cufflinks 0.931       Low
cufflinks 1.317        
cufflinks 1.862        
cufflinks 2.946       High
cufflinks 1.978        
cufflinks 2.311        
cufflinks 2.145        
cufflinks 2.182        
cufflinks 2.352        
cufflinks 2.121        
cufflinks 1.755        
cufflinks 1.604        
cufflinks 2.678       High
cufflinks 2.529        
cufflinks 3.329       High
cufflinks 2.446        
cufflinks 2.308        
cufflinks 2.028        

0 Strain