Gene : Sobic.003G384200 S. bicolor v3.1.1
Defline:  (1 of 2) PTHR22600//PTHR22600:SF18 - BETA-HEXOSAMINIDASE // SUBFAMILY NOT NAMED Genomic Order:  4039
Name:  ? Sobic.003G384200 Secondary Identifier:  ? PAC:37916453
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor PWY-6902 Sorghum bicolor pathologic  

Genomics

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Gene Structure Displayer

Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.003G384200 0.5kb upstream 0.5kb upstream 5600 true Chr03: 69699487-69705086 Sorghum bicolor
Sobic.003G384200 0.5kb upstream 0.5kb upstream 500 false Chr03: 69704587-69705086 Sorghum bicolor
Sobic.003G384200 0.5kb downstream 0.5kb downstream 5600 true Chr03: 69698987-69704586 Sorghum bicolor
Sobic.003G384200 0.5kb downstream 0.5kb downstream 500 false Chr03: 69698987-69699486 Sorghum bicolor
Sobic.003G384200 1.0kb upstream 1.0kb upstream 6100 true Chr03: 69699487-69705586 Sorghum bicolor
Sobic.003G384200 1.0kb upstream 1.0kb upstream 1000 false Chr03: 69704587-69705586 Sorghum bicolor
Sobic.003G384200 1.0kb downstream 1.0kb downstream 6100 true Chr03: 69698487-69704586 Sorghum bicolor
Sobic.003G384200 1.0kb downstream 1.0kb downstream 1000 false Chr03: 69698487-69699486 Sorghum bicolor
Sobic.003G384200 2.0kb upstream 2.0kb upstream 7100 true Chr03: 69699487-69706586 Sorghum bicolor
Sobic.003G384200 2.0kb upstream 2.0kb upstream 2000 false Chr03: 69704587-69706586 Sorghum bicolor
Sobic.003G384200 2.0kb downstream 2.0kb downstream 7100 true Chr03: 69697487-69704586 Sorghum bicolor
Sobic.003G384200 2.0kb downstream 2.0kb downstream 2000 false Chr03: 69697487-69699486 Sorghum bicolor
Sobic.003G384200 5.0kb upstream 5.0kb upstream 10100 true Chr03: 69699487-69709586 Sorghum bicolor
Sobic.003G384200 5.0kb upstream 5.0kb upstream 5000 false Chr03: 69704587-69709586 Sorghum bicolor
Sobic.003G384200 5.0kb downstream 5.0kb downstream 10100 true Chr03: 69694487-69704586 Sorghum bicolor
Sobic.003G384200 5.0kb downstream 5.0kb downstream 5000 false Chr03: 69694487-69699486 Sorghum bicolor
Sobic.003G384200 10.0kb upstream 10.0kb upstream 15100 true Chr03: 69699487-69714586 Sorghum bicolor
Sobic.003G384200 10.0kb upstream 10.0kb upstream 10000 false Chr03: 69704587-69714586 Sorghum bicolor
Sobic.003G384200 10.0kb downstream 10.0kb downstream 15100 true Chr03: 69689487-69704586 Sorghum bicolor
Sobic.003G384200 10.0kb downstream 10.0kb downstream 10000 false Chr03: 69689487-69699486 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122179982 5267 Panicoideae View MSA
124571085 5269 Grass View MSA
122047167 5273 Angiosperm View MSA
121346826 5274 Embryophyte View MSA
123428053 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.014     Low Low
cufflinks 0.007     Low Low
cufflinks 0.002     Low Low
cufflinks 0.001     Low Low
cufflinks 0.398        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.689        
cufflinks 0.919        
cufflinks 0.006     Low Low
cufflinks 0.016     Low Low
cufflinks 0.508        
cufflinks 1.099        
cufflinks 1.295        
cufflinks 0.498        
cufflinks 1.722       High
cufflinks 0.002     Low Low
cufflinks 0.707        
cufflinks 0.761        
cufflinks 0.014     Low Low
cufflinks 0.848        
cufflinks 0.049     Low  
cufflinks 0.32        
cufflinks 0.799        
cufflinks 0.548        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.01     Low Low
cufflinks 1.676       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 1.732       High
cufflinks 0.238        

0 Strain