Gene : Sobic.001G008600 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR31956//PTHR31956:SF1 - FAMILY NOT NAMED // NON-SPECIFIC PHOSPHOLIPASE C3-RELATED Genomic Order:  86
Name:  ? Sobic.001G008600 Secondary Identifier:  ? PAC:37939486
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor LIPASYN-PWY Sorghum bicolor pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.001G008600 0.5kb upstream 0.5kb upstream 3283 true Chr01: 819598-822880 Sorghum bicolor
Sobic.001G008600 0.5kb upstream 0.5kb upstream 500 false Chr01: 822381-822880 Sorghum bicolor
Sobic.001G008600 0.5kb downstream 0.5kb downstream 3283 true Chr01: 819098-822380 Sorghum bicolor
Sobic.001G008600 0.5kb downstream 0.5kb downstream 500 false Chr01: 819098-819597 Sorghum bicolor
Sobic.001G008600 1.0kb upstream 1.0kb upstream 3783 true Chr01: 819598-823380 Sorghum bicolor
Sobic.001G008600 1.0kb upstream 1.0kb upstream 1000 false Chr01: 822381-823380 Sorghum bicolor
Sobic.001G008600 1.0kb downstream 1.0kb downstream 3783 true Chr01: 818598-822380 Sorghum bicolor
Sobic.001G008600 1.0kb downstream 1.0kb downstream 1000 false Chr01: 818598-819597 Sorghum bicolor
Sobic.001G008600 2.0kb upstream 2.0kb upstream 4783 true Chr01: 819598-824380 Sorghum bicolor
Sobic.001G008600 2.0kb upstream 2.0kb upstream 2000 false Chr01: 822381-824380 Sorghum bicolor
Sobic.001G008600 2.0kb downstream 2.0kb downstream 4783 true Chr01: 817598-822380 Sorghum bicolor
Sobic.001G008600 2.0kb downstream 2.0kb downstream 2000 false Chr01: 817598-819597 Sorghum bicolor
Sobic.001G008600 5.0kb upstream 5.0kb upstream 7783 true Chr01: 819598-827380 Sorghum bicolor
Sobic.001G008600 5.0kb upstream 5.0kb upstream 5000 false Chr01: 822381-827380 Sorghum bicolor
Sobic.001G008600 5.0kb downstream 5.0kb downstream 7783 true Chr01: 814598-822380 Sorghum bicolor
Sobic.001G008600 5.0kb downstream 5.0kb downstream 5000 false Chr01: 814598-819597 Sorghum bicolor
Sobic.001G008600 10.0kb upstream 10.0kb upstream 12783 true Chr01: 819598-832380 Sorghum bicolor
Sobic.001G008600 10.0kb upstream 10.0kb upstream 10000 false Chr01: 822381-832380 Sorghum bicolor
Sobic.001G008600 10.0kb downstream 10.0kb downstream 12783 true Chr01: 809598-822380 Sorghum bicolor
Sobic.001G008600 10.0kb downstream 10.0kb downstream 10000 false Chr01: 809598-819597 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122196425 5267 Panicoideae View MSA
124587656 5269 Grass View MSA
122043766 5273 Angiosperm View MSA
121350885 5274 Embryophyte View MSA
123381922 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.153        
cufflinks 1.067        
cufflinks 0.074       Low
cufflinks 0.042     Low Low
cufflinks 0.073     Low Low
cufflinks 0.184        
cufflinks 3.145       High
cufflinks 1.964       High
cufflinks 0.142        
cufflinks 0.175        
cufflinks 4.156       High
cufflinks 0.899        
cufflinks 0.16        
cufflinks 1.023        
cufflinks 1.39        
cufflinks 0.068     Low Low
cufflinks 3.376       High
cufflinks 2.327       High
cufflinks 0.112        
cufflinks 0.427        
cufflinks 0.179        
cufflinks 0.755        
cufflinks 4.254       High
cufflinks 2.75       High
cufflinks 0.065       Low
cufflinks 1.028        
cufflinks 0.401        
cufflinks 0.248        
cufflinks 1.874        
cufflinks 3.594       High

0 Strain