Gene : Sobic.001G010800 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR11586:SF18 - NUCLEIC ACID-BINDING, OB-FOLD-LIKE PROTEIN Genomic Order:  108
Name:  ? Sobic.001G010800 Secondary Identifier:  ? PAC:37940188
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor TRNA-CHARGING-PWY Sorghum bicolor pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.001G010800 0.5kb upstream 0.5kb upstream 2961 true Chr01: 947555-950515 Sorghum bicolor
Sobic.001G010800 0.5kb upstream 0.5kb upstream 500 false Chr01: 947555-948054 Sorghum bicolor
Sobic.001G010800 0.5kb downstream 0.5kb downstream 2961 true Chr01: 948055-951015 Sorghum bicolor
Sobic.001G010800 0.5kb downstream 0.5kb downstream 500 false Chr01: 950516-951015 Sorghum bicolor
Sobic.001G010800 1.0kb upstream 1.0kb upstream 3461 true Chr01: 947055-950515 Sorghum bicolor
Sobic.001G010800 1.0kb upstream 1.0kb upstream 1000 false Chr01: 947055-948054 Sorghum bicolor
Sobic.001G010800 1.0kb downstream 1.0kb downstream 3461 true Chr01: 948055-951515 Sorghum bicolor
Sobic.001G010800 1.0kb downstream 1.0kb downstream 1000 false Chr01: 950516-951515 Sorghum bicolor
Sobic.001G010800 2.0kb upstream 2.0kb upstream 4461 true Chr01: 946055-950515 Sorghum bicolor
Sobic.001G010800 2.0kb upstream 2.0kb upstream 2000 false Chr01: 946055-948054 Sorghum bicolor
Sobic.001G010800 2.0kb downstream 2.0kb downstream 4461 true Chr01: 948055-952515 Sorghum bicolor
Sobic.001G010800 2.0kb downstream 2.0kb downstream 2000 false Chr01: 950516-952515 Sorghum bicolor
Sobic.001G010800 5.0kb upstream 5.0kb upstream 7461 true Chr01: 943055-950515 Sorghum bicolor
Sobic.001G010800 5.0kb upstream 5.0kb upstream 5000 false Chr01: 943055-948054 Sorghum bicolor
Sobic.001G010800 5.0kb downstream 5.0kb downstream 7461 true Chr01: 948055-955515 Sorghum bicolor
Sobic.001G010800 5.0kb downstream 5.0kb downstream 5000 false Chr01: 950516-955515 Sorghum bicolor
Sobic.001G010800 10.0kb upstream 10.0kb upstream 12461 true Chr01: 938055-950515 Sorghum bicolor
Sobic.001G010800 10.0kb upstream 10.0kb upstream 10000 false Chr01: 938055-948054 Sorghum bicolor
Sobic.001G010800 10.0kb downstream 10.0kb downstream 12461 true Chr01: 948055-960515 Sorghum bicolor
Sobic.001G010800 10.0kb downstream 10.0kb downstream 10000 false Chr01: 950516-960515 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122178382 5267 Panicoideae View MSA
124568725 5269 Grass View MSA
122045155 5273 Angiosperm View MSA
121346605 5274 Embryophyte View MSA
123427531 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.526     High High
cufflinks 2.555       Low
cufflinks 6.221        
cufflinks 6.292        
cufflinks 8.06        
cufflinks 4.643        
cufflinks 11.522     High High
cufflinks 10.229     High  
cufflinks 4.894        
cufflinks 4.939        
cufflinks 4.684        
cufflinks 4.334        
cufflinks 2.171       Low
cufflinks 5.074        
cufflinks 4.47        
cufflinks 4.589        
cufflinks 10.157        
cufflinks 12.748     High High
cufflinks 5.436        
cufflinks 6.866        
cufflinks 8.597        
cufflinks 7.717        
cufflinks 5.959        
cufflinks 6.138        
cufflinks 1.656       Low
cufflinks 1.651       Low
cufflinks 4.149        
cufflinks 23.608     High High
cufflinks 24.809     High High
cufflinks 6.034        

0 Strain