Gene : Sobic.001G003100 S. bicolor v3.1.1
Defline:  (1 of 2) PTHR11353:SF11 - CHAPERONIN 60 SUBUNIT ALPHA 1, CHLOROPLASTIC Genomic Order:  31
Name:  ? Sobic.001G003100 Secondary Identifier:  ? PAC:37941236
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.001G003100 0.5kb upstream 0.5kb upstream 4576 true Chr01: 277606-282181 Sorghum bicolor
Sobic.001G003100 0.5kb upstream 0.5kb upstream 500 false Chr01: 277606-278105 Sorghum bicolor
Sobic.001G003100 0.5kb downstream 0.5kb downstream 4576 true Chr01: 278106-282681 Sorghum bicolor
Sobic.001G003100 0.5kb downstream 0.5kb downstream 500 false Chr01: 282182-282681 Sorghum bicolor
Sobic.001G003100 1.0kb upstream 1.0kb upstream 5076 true Chr01: 277106-282181 Sorghum bicolor
Sobic.001G003100 1.0kb upstream 1.0kb upstream 1000 false Chr01: 277106-278105 Sorghum bicolor
Sobic.001G003100 1.0kb downstream 1.0kb downstream 5076 true Chr01: 278106-283181 Sorghum bicolor
Sobic.001G003100 1.0kb downstream 1.0kb downstream 1000 false Chr01: 282182-283181 Sorghum bicolor
Sobic.001G003100 2.0kb upstream 2.0kb upstream 6076 true Chr01: 276106-282181 Sorghum bicolor
Sobic.001G003100 2.0kb upstream 2.0kb upstream 2000 false Chr01: 276106-278105 Sorghum bicolor
Sobic.001G003100 2.0kb downstream 2.0kb downstream 6076 true Chr01: 278106-284181 Sorghum bicolor
Sobic.001G003100 2.0kb downstream 2.0kb downstream 2000 false Chr01: 282182-284181 Sorghum bicolor
Sobic.001G003100 5.0kb upstream 5.0kb upstream 9076 true Chr01: 273106-282181 Sorghum bicolor
Sobic.001G003100 5.0kb upstream 5.0kb upstream 5000 false Chr01: 273106-278105 Sorghum bicolor
Sobic.001G003100 5.0kb downstream 5.0kb downstream 9076 true Chr01: 278106-287181 Sorghum bicolor
Sobic.001G003100 5.0kb downstream 5.0kb downstream 5000 false Chr01: 282182-287181 Sorghum bicolor
Sobic.001G003100 10.0kb upstream 10.0kb upstream 14076 true Chr01: 268106-282181 Sorghum bicolor
Sobic.001G003100 10.0kb upstream 10.0kb upstream 10000 false Chr01: 268106-278105 Sorghum bicolor
Sobic.001G003100 10.0kb downstream 10.0kb downstream 14076 true Chr01: 278106-292181 Sorghum bicolor
Sobic.001G003100 10.0kb downstream 10.0kb downstream 10000 false Chr01: 282182-292181 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122197315 5267 Panicoideae View MSA
124575686 5269 Grass View MSA
122048196 5273 Angiosperm View MSA
121346372 5274 Embryophyte View MSA
123427883 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 20.172     High  
cufflinks 10.297     High Low
cufflinks 9.791     High Low
cufflinks 24.109     High  
cufflinks 38.693     High  
cufflinks 11.6       Low
cufflinks 49.385     High  
cufflinks 34.265     High  
cufflinks 33.749     High  
cufflinks 30.592     High  
cufflinks 36.181     High  
cufflinks 39.947     High  
cufflinks 16.107     High Low
cufflinks 41.842     High  
cufflinks 20.084     High  
cufflinks 15.955     High Low
cufflinks 52.19     High High
cufflinks 52.259     High High
cufflinks 16.329     High Low
cufflinks 40.02     High  
cufflinks 33.591     High  
cufflinks 39.702     High  
cufflinks 48.261     High  
cufflinks 48.279     High  
cufflinks 20.976     High  
cufflinks 17.166     High Low
cufflinks 41.484     High  
cufflinks 53.36     High High
cufflinks 84.612     High High
cufflinks 43.589     High  

0 Strain