Gene : Sobic.003G388900 S. bicolor v3.1.1
Defline:  (1 of 164) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  4091
Name:  ? Sobic.003G388900 Secondary Identifier:  ? PAC:37914748
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.003G388900 0.5kb upstream 0.5kb upstream 2865 true Chr03: 69991519-69994383 Sorghum bicolor
Sobic.003G388900 0.5kb upstream 0.5kb upstream 500 false Chr03: 69991519-69992018 Sorghum bicolor
Sobic.003G388900 0.5kb downstream 0.5kb downstream 2865 true Chr03: 69992019-69994883 Sorghum bicolor
Sobic.003G388900 0.5kb downstream 0.5kb downstream 500 false Chr03: 69994384-69994883 Sorghum bicolor
Sobic.003G388900 1.0kb upstream 1.0kb upstream 3365 true Chr03: 69991019-69994383 Sorghum bicolor
Sobic.003G388900 1.0kb upstream 1.0kb upstream 1000 false Chr03: 69991019-69992018 Sorghum bicolor
Sobic.003G388900 1.0kb downstream 1.0kb downstream 3365 true Chr03: 69992019-69995383 Sorghum bicolor
Sobic.003G388900 1.0kb downstream 1.0kb downstream 1000 false Chr03: 69994384-69995383 Sorghum bicolor
Sobic.003G388900 2.0kb upstream 2.0kb upstream 4365 true Chr03: 69990019-69994383 Sorghum bicolor
Sobic.003G388900 2.0kb upstream 2.0kb upstream 2000 false Chr03: 69990019-69992018 Sorghum bicolor
Sobic.003G388900 2.0kb downstream 2.0kb downstream 4365 true Chr03: 69992019-69996383 Sorghum bicolor
Sobic.003G388900 2.0kb downstream 2.0kb downstream 2000 false Chr03: 69994384-69996383 Sorghum bicolor
Sobic.003G388900 5.0kb upstream 5.0kb upstream 7365 true Chr03: 69987019-69994383 Sorghum bicolor
Sobic.003G388900 5.0kb upstream 5.0kb upstream 5000 false Chr03: 69987019-69992018 Sorghum bicolor
Sobic.003G388900 5.0kb downstream 5.0kb downstream 7365 true Chr03: 69992019-69999383 Sorghum bicolor
Sobic.003G388900 5.0kb downstream 5.0kb downstream 5000 false Chr03: 69994384-69999383 Sorghum bicolor
Sobic.003G388900 10.0kb upstream 10.0kb upstream 12365 true Chr03: 69982019-69994383 Sorghum bicolor
Sobic.003G388900 10.0kb upstream 10.0kb upstream 10000 false Chr03: 69982019-69992018 Sorghum bicolor
Sobic.003G388900 10.0kb downstream 10.0kb downstream 12365 true Chr03: 69992019-70004383 Sorghum bicolor
Sobic.003G388900 10.0kb downstream 10.0kb downstream 10000 false Chr03: 69994384-70004383 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122192964 5267 Panicoideae View MSA
124575899 5269 Grass View MSA
122045505 5273 Angiosperm View MSA
121310455 5274 Embryophyte View MSA
123347933 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 56.852     High High
cufflinks 0.647       Low
cufflinks 1.4       Low
cufflinks 4.06        
cufflinks 11.7        
cufflinks 2.872        
cufflinks 8.026        
cufflinks 1.006       Low
cufflinks 8.38        
cufflinks 10.105        
cufflinks 15.703     High  
cufflinks 15.08     High  
cufflinks 5.001        
cufflinks 17.941     High  
cufflinks 5.748        
cufflinks 2.262       Low
cufflinks 9.229        
cufflinks 8.551        
cufflinks 2.53        
cufflinks 10.18        
cufflinks 18.181     High  
cufflinks 19.116     High  
cufflinks 20.827     High  
cufflinks 23.039     High High
cufflinks 0.944       Low
cufflinks 0.591       Low
cufflinks 6.679        
cufflinks 17.062     High  
cufflinks 5.162        
cufflinks 8.601        

0 Strain