Gene : Sobic.003G390400 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR13343//PTHR13343:SF18 - CREG1 PROTEIN // PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN-LIKE PROTEIN Genomic Order:  4106
Name:  ? Sobic.003G390400 Secondary Identifier:  ? PAC:37912803
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0 Pathways

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.003G390400 0.5kb upstream 0.5kb upstream 6440 true Chr03: 70141123-70147562 Sorghum bicolor
Sobic.003G390400 0.5kb upstream 0.5kb upstream 500 false Chr03: 70147063-70147562 Sorghum bicolor
Sobic.003G390400 0.5kb downstream 0.5kb downstream 6440 true Chr03: 70140623-70147062 Sorghum bicolor
Sobic.003G390400 0.5kb downstream 0.5kb downstream 500 false Chr03: 70140623-70141122 Sorghum bicolor
Sobic.003G390400 1.0kb upstream 1.0kb upstream 6940 true Chr03: 70141123-70148062 Sorghum bicolor
Sobic.003G390400 1.0kb upstream 1.0kb upstream 1000 false Chr03: 70147063-70148062 Sorghum bicolor
Sobic.003G390400 1.0kb downstream 1.0kb downstream 6940 true Chr03: 70140123-70147062 Sorghum bicolor
Sobic.003G390400 1.0kb downstream 1.0kb downstream 1000 false Chr03: 70140123-70141122 Sorghum bicolor
Sobic.003G390400 2.0kb upstream 2.0kb upstream 7940 true Chr03: 70141123-70149062 Sorghum bicolor
Sobic.003G390400 2.0kb upstream 2.0kb upstream 2000 false Chr03: 70147063-70149062 Sorghum bicolor
Sobic.003G390400 2.0kb downstream 2.0kb downstream 7940 true Chr03: 70139123-70147062 Sorghum bicolor
Sobic.003G390400 2.0kb downstream 2.0kb downstream 2000 false Chr03: 70139123-70141122 Sorghum bicolor
Sobic.003G390400 5.0kb upstream 5.0kb upstream 10940 true Chr03: 70141123-70152062 Sorghum bicolor
Sobic.003G390400 5.0kb upstream 5.0kb upstream 5000 false Chr03: 70147063-70152062 Sorghum bicolor
Sobic.003G390400 5.0kb downstream 5.0kb downstream 10940 true Chr03: 70136123-70147062 Sorghum bicolor
Sobic.003G390400 5.0kb downstream 5.0kb downstream 5000 false Chr03: 70136123-70141122 Sorghum bicolor
Sobic.003G390400 10.0kb upstream 10.0kb upstream 15940 true Chr03: 70141123-70157062 Sorghum bicolor
Sobic.003G390400 10.0kb upstream 10.0kb upstream 10000 false Chr03: 70147063-70157062 Sorghum bicolor
Sobic.003G390400 10.0kb downstream 10.0kb downstream 15940 true Chr03: 70131123-70147062 Sorghum bicolor
Sobic.003G390400 10.0kb downstream 10.0kb downstream 10000 false Chr03: 70131123-70141122 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122178316 5267 Panicoideae View MSA
124568249 5269 Grass View MSA
122050575 5273 Angiosperm View MSA
121348228 5274 Embryophyte View MSA
123380781 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.023       Low
cufflinks 53.481     High High
cufflinks 24.321     High  
cufflinks 20.065     High  
cufflinks 15.831     High  
cufflinks 23.165     High  
cufflinks 29.084     High  
cufflinks 45.963     High High
cufflinks 26.213     High  
cufflinks 21.773     High  
cufflinks 26.233     High  
cufflinks 11.275        
cufflinks 16.608     High  
cufflinks 10.544        
cufflinks 18.825     High  
cufflinks 30.076     High  
cufflinks 23.397     High  
cufflinks 28.626     High  
cufflinks 32.768     High  
cufflinks 10.412        
cufflinks 15.002     High  
cufflinks 11.21        
cufflinks 10.031        
cufflinks 10.48        
cufflinks 45.243     High High
cufflinks 58.586     High High
cufflinks 13.852     High  
cufflinks 2.097       Low
cufflinks 24.717     High  
cufflinks 18.551     High  

0 Strain