Gene : Sobic.003G397700 S. bicolor v3.1.1
Defline:  (1 of 1) K14765 - U3 small nucleolar ribonucleoprotein protein LCP5 (NGDN, LCP5) Genomic Order:  4185
Name:  ? Sobic.003G397700 Secondary Identifier:  ? PAC:37912962
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Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.003G397700 0.5kb upstream 0.5kb upstream 3547 true Chr03: 70722504-70726050 Sorghum bicolor
Sobic.003G397700 0.5kb upstream 0.5kb upstream 500 false Chr03: 70725551-70726050 Sorghum bicolor
Sobic.003G397700 0.5kb downstream 0.5kb downstream 3547 true Chr03: 70722004-70725550 Sorghum bicolor
Sobic.003G397700 0.5kb downstream 0.5kb downstream 500 false Chr03: 70722004-70722503 Sorghum bicolor
Sobic.003G397700 1.0kb upstream 1.0kb upstream 4047 true Chr03: 70722504-70726550 Sorghum bicolor
Sobic.003G397700 1.0kb upstream 1.0kb upstream 1000 false Chr03: 70725551-70726550 Sorghum bicolor
Sobic.003G397700 1.0kb downstream 1.0kb downstream 4047 true Chr03: 70721504-70725550 Sorghum bicolor
Sobic.003G397700 1.0kb downstream 1.0kb downstream 1000 false Chr03: 70721504-70722503 Sorghum bicolor
Sobic.003G397700 2.0kb upstream 2.0kb upstream 5047 true Chr03: 70722504-70727550 Sorghum bicolor
Sobic.003G397700 2.0kb upstream 2.0kb upstream 2000 false Chr03: 70725551-70727550 Sorghum bicolor
Sobic.003G397700 2.0kb downstream 2.0kb downstream 5047 true Chr03: 70720504-70725550 Sorghum bicolor
Sobic.003G397700 2.0kb downstream 2.0kb downstream 2000 false Chr03: 70720504-70722503 Sorghum bicolor
Sobic.003G397700 5.0kb upstream 5.0kb upstream 8047 true Chr03: 70722504-70730550 Sorghum bicolor
Sobic.003G397700 5.0kb upstream 5.0kb upstream 5000 false Chr03: 70725551-70730550 Sorghum bicolor
Sobic.003G397700 5.0kb downstream 5.0kb downstream 8047 true Chr03: 70717504-70725550 Sorghum bicolor
Sobic.003G397700 5.0kb downstream 5.0kb downstream 5000 false Chr03: 70717504-70722503 Sorghum bicolor
Sobic.003G397700 10.0kb upstream 10.0kb upstream 13047 true Chr03: 70722504-70735550 Sorghum bicolor
Sobic.003G397700 10.0kb upstream 10.0kb upstream 10000 false Chr03: 70725551-70735550 Sorghum bicolor
Sobic.003G397700 10.0kb downstream 10.0kb downstream 13047 true Chr03: 70712504-70725550 Sorghum bicolor
Sobic.003G397700 10.0kb downstream 10.0kb downstream 10000 false Chr03: 70712504-70722503 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122189285 5267 Panicoideae View MSA
124569087 5269 Grass View MSA
122047581 5273 Angiosperm View MSA
121345702 5274 Embryophyte View MSA
123380258 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 17.575     High High
cufflinks 0.344       Low
cufflinks 1.569        
cufflinks 5.006        
cufflinks 2.396        
cufflinks 3.475        
cufflinks 2.349        
cufflinks 0.599       Low
cufflinks 5.129        
cufflinks 5.817        
cufflinks 3.811        
cufflinks 4.05        
cufflinks 1.725        
cufflinks 4.362        
cufflinks 2.027        
cufflinks 0.873       Low
cufflinks 2.876        
cufflinks 2.974        
cufflinks 1.079       Low
cufflinks 2.966        
cufflinks 8.216       High
cufflinks 5.454        
cufflinks 5.298        
cufflinks 5.102        
cufflinks 0.774       Low
cufflinks 0.468       Low
cufflinks 2.542        
cufflinks 10.758     High High
cufflinks 1.665        
cufflinks 4.781        

0 Strain