Gene : Sobic.001G088500 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR22904//PTHR22904:SF312 - TPR REPEAT CONTAINING PROTEIN // CARBOXYLATE CLAMP-TETRATRICOPEPTIDE REPEAT PROTEIN Genomic Order:  906
Name:  ? Sobic.001G088500 Secondary Identifier:  ? PAC:37938284
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0 Pathways

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.001G088500 0.5kb upstream 0.5kb upstream 3256 true Chr01: 6880865-6884120 Sorghum bicolor
Sobic.001G088500 0.5kb upstream 0.5kb upstream 500 false Chr01: 6880865-6881364 Sorghum bicolor
Sobic.001G088500 0.5kb downstream 0.5kb downstream 3256 true Chr01: 6881365-6884620 Sorghum bicolor
Sobic.001G088500 0.5kb downstream 0.5kb downstream 500 false Chr01: 6884121-6884620 Sorghum bicolor
Sobic.001G088500 1.0kb upstream 1.0kb upstream 3756 true Chr01: 6880365-6884120 Sorghum bicolor
Sobic.001G088500 1.0kb upstream 1.0kb upstream 1000 false Chr01: 6880365-6881364 Sorghum bicolor
Sobic.001G088500 1.0kb downstream 1.0kb downstream 3756 true Chr01: 6881365-6885120 Sorghum bicolor
Sobic.001G088500 1.0kb downstream 1.0kb downstream 1000 false Chr01: 6884121-6885120 Sorghum bicolor
Sobic.001G088500 2.0kb upstream 2.0kb upstream 4756 true Chr01: 6879365-6884120 Sorghum bicolor
Sobic.001G088500 2.0kb upstream 2.0kb upstream 2000 false Chr01: 6879365-6881364 Sorghum bicolor
Sobic.001G088500 2.0kb downstream 2.0kb downstream 4756 true Chr01: 6881365-6886120 Sorghum bicolor
Sobic.001G088500 2.0kb downstream 2.0kb downstream 2000 false Chr01: 6884121-6886120 Sorghum bicolor
Sobic.001G088500 5.0kb upstream 5.0kb upstream 7756 true Chr01: 6876365-6884120 Sorghum bicolor
Sobic.001G088500 5.0kb upstream 5.0kb upstream 5000 false Chr01: 6876365-6881364 Sorghum bicolor
Sobic.001G088500 5.0kb downstream 5.0kb downstream 7756 true Chr01: 6881365-6889120 Sorghum bicolor
Sobic.001G088500 5.0kb downstream 5.0kb downstream 5000 false Chr01: 6884121-6889120 Sorghum bicolor
Sobic.001G088500 10.0kb upstream 10.0kb upstream 12756 true Chr01: 6871365-6884120 Sorghum bicolor
Sobic.001G088500 10.0kb upstream 10.0kb upstream 10000 false Chr01: 6871365-6881364 Sorghum bicolor
Sobic.001G088500 10.0kb downstream 10.0kb downstream 12756 true Chr01: 6881365-6894120 Sorghum bicolor
Sobic.001G088500 10.0kb downstream 10.0kb downstream 10000 false Chr01: 6884121-6894120 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122184498 5267 Panicoideae View MSA
124570894 5269 Grass View MSA
122046706 5273 Angiosperm View MSA
121343893 5274 Embryophyte View MSA
123425417 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 19.516     High High
cufflinks 5.499       Low
cufflinks 11.921     High  
cufflinks 20.274     High High
cufflinks 13.239     High  
cufflinks 18.739     High High
cufflinks 8.11       Low
cufflinks 9.109     High  
cufflinks 21.13     High High
cufflinks 17.524     High High
cufflinks 9.126        
cufflinks 12.064     High  
cufflinks 12.85     High  
cufflinks 11.523     High  
cufflinks 12.426     High  
cufflinks 9.111        
cufflinks 7.365       Low
cufflinks 7.714       Low
cufflinks 8.138       Low
cufflinks 11.391        
cufflinks 15.418     High  
cufflinks 11.504        
cufflinks 9.236        
cufflinks 9.327        
cufflinks 9.334     High  
cufflinks 6.74     High Low
cufflinks 15.017     High  
cufflinks 37.063     High High
cufflinks 7.376       Low
cufflinks 14.583     High  

0 Strain