Gene : Sobic.001G076500 S. bicolor v3.1.1

Defline:  (1 of 1) PTHR21569:SF2 - 30S RIBOSOMAL PROTEIN S9, CHLOROPLASTIC Genomic Order:  778
Name:  ? Sobic.001G076500 Secondary Identifier:  ? PAC:37943708

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.001G076500 0.5kb upstream 0.5kb upstream 3254 true Chr01: 5883602-5886855 Sorghum bicolor
Sobic.001G076500 0.5kb upstream 0.5kb upstream 500 false Chr01: 5883602-5884101 Sorghum bicolor
Sobic.001G076500 0.5kb downstream 0.5kb downstream 3254 true Chr01: 5884102-5887355 Sorghum bicolor
Sobic.001G076500 0.5kb downstream 0.5kb downstream 500 false Chr01: 5886856-5887355 Sorghum bicolor
Sobic.001G076500 1.0kb upstream 1.0kb upstream 3754 true Chr01: 5883102-5886855 Sorghum bicolor
Sobic.001G076500 1.0kb upstream 1.0kb upstream 1000 false Chr01: 5883102-5884101 Sorghum bicolor
Sobic.001G076500 1.0kb downstream 1.0kb downstream 3754 true Chr01: 5884102-5887855 Sorghum bicolor
Sobic.001G076500 1.0kb downstream 1.0kb downstream 1000 false Chr01: 5886856-5887855 Sorghum bicolor
Sobic.001G076500 2.0kb upstream 2.0kb upstream 4754 true Chr01: 5882102-5886855 Sorghum bicolor
Sobic.001G076500 2.0kb upstream 2.0kb upstream 2000 false Chr01: 5882102-5884101 Sorghum bicolor
Sobic.001G076500 2.0kb downstream 2.0kb downstream 4754 true Chr01: 5884102-5888855 Sorghum bicolor
Sobic.001G076500 2.0kb downstream 2.0kb downstream 2000 false Chr01: 5886856-5888855 Sorghum bicolor
Sobic.001G076500 5.0kb upstream 5.0kb upstream 7754 true Chr01: 5879102-5886855 Sorghum bicolor
Sobic.001G076500 5.0kb upstream 5.0kb upstream 5000 false Chr01: 5879102-5884101 Sorghum bicolor
Sobic.001G076500 5.0kb downstream 5.0kb downstream 7754 true Chr01: 5884102-5891855 Sorghum bicolor
Sobic.001G076500 5.0kb downstream 5.0kb downstream 5000 false Chr01: 5886856-5891855 Sorghum bicolor
Sobic.001G076500 10.0kb upstream 10.0kb upstream 12754 true Chr01: 5874102-5886855 Sorghum bicolor
Sobic.001G076500 10.0kb upstream 10.0kb upstream 10000 false Chr01: 5874102-5884101 Sorghum bicolor
Sobic.001G076500 10.0kb downstream 10.0kb downstream 12754 true Chr01: 5884102-5896855 Sorghum bicolor
Sobic.001G076500 10.0kb downstream 10.0kb downstream 10000 false Chr01: 5886856-5896855 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122189711 5267 Panicoideae View MSA
124588685 5269 Grass View MSA
122043582 5273 Angiosperm View MSA
121345989 5274 Embryophyte View MSA
123426879 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.732        
cufflinks 17.211     High High
cufflinks 12.762     High  
cufflinks 3.968        
cufflinks 2.472        
cufflinks 5.031        
cufflinks 31.022     High High
cufflinks 44.921     High High
cufflinks 0.558        
cufflinks 0.534        
cufflinks 0.231       Low
cufflinks 0.236       Low
cufflinks 0.533        
cufflinks 0.289       Low
cufflinks 3.226        
cufflinks 16.204     High High
cufflinks 29.53     High High
cufflinks 37.879     High High
cufflinks 11.408     High  
cufflinks 10.782        
cufflinks 2.29        
cufflinks 0.344       Low
cufflinks 0.279       Low
cufflinks 0.316       Low
cufflinks 5.405        
cufflinks 11.849     High  
cufflinks 0.282       Low
cufflinks 0.442        
cufflinks 74.27     High High
cufflinks 4.162        

0 Strain