Gene : Sobic.001G049300 S. bicolor v3.1.1
Defline:  (1 of 1) K04716 - sphingosine-1-phosphate phosphatase 1 (SGPP1) Genomic Order:  499
Name:  ? Sobic.001G049300 Secondary Identifier:  ? PAC:37942284
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor TRIGLSYN-PWY Sorghum bicolor pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.001G049300 0.5kb upstream 0.5kb upstream 3711 true Chr01: 3607779-3611489 Sorghum bicolor
Sobic.001G049300 0.5kb upstream 0.5kb upstream 500 false Chr01: 3607779-3608278 Sorghum bicolor
Sobic.001G049300 0.5kb downstream 0.5kb downstream 3711 true Chr01: 3608279-3611989 Sorghum bicolor
Sobic.001G049300 0.5kb downstream 0.5kb downstream 500 false Chr01: 3611490-3611989 Sorghum bicolor
Sobic.001G049300 1.0kb upstream 1.0kb upstream 4211 true Chr01: 3607279-3611489 Sorghum bicolor
Sobic.001G049300 1.0kb upstream 1.0kb upstream 1000 false Chr01: 3607279-3608278 Sorghum bicolor
Sobic.001G049300 1.0kb downstream 1.0kb downstream 4211 true Chr01: 3608279-3612489 Sorghum bicolor
Sobic.001G049300 1.0kb downstream 1.0kb downstream 1000 false Chr01: 3611490-3612489 Sorghum bicolor
Sobic.001G049300 2.0kb upstream 2.0kb upstream 5211 true Chr01: 3606279-3611489 Sorghum bicolor
Sobic.001G049300 2.0kb upstream 2.0kb upstream 2000 false Chr01: 3606279-3608278 Sorghum bicolor
Sobic.001G049300 2.0kb downstream 2.0kb downstream 5211 true Chr01: 3608279-3613489 Sorghum bicolor
Sobic.001G049300 2.0kb downstream 2.0kb downstream 2000 false Chr01: 3611490-3613489 Sorghum bicolor
Sobic.001G049300 5.0kb upstream 5.0kb upstream 8211 true Chr01: 3603279-3611489 Sorghum bicolor
Sobic.001G049300 5.0kb upstream 5.0kb upstream 5000 false Chr01: 3603279-3608278 Sorghum bicolor
Sobic.001G049300 5.0kb downstream 5.0kb downstream 8211 true Chr01: 3608279-3616489 Sorghum bicolor
Sobic.001G049300 5.0kb downstream 5.0kb downstream 5000 false Chr01: 3611490-3616489 Sorghum bicolor
Sobic.001G049300 10.0kb upstream 10.0kb upstream 13211 true Chr01: 3598279-3611489 Sorghum bicolor
Sobic.001G049300 10.0kb upstream 10.0kb upstream 10000 false Chr01: 3598279-3608278 Sorghum bicolor
Sobic.001G049300 10.0kb downstream 10.0kb downstream 13211 true Chr01: 3608279-3621489 Sorghum bicolor
Sobic.001G049300 10.0kb downstream 10.0kb downstream 10000 false Chr01: 3611490-3621489 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122197916 5267 Panicoideae View MSA
124580296 5269 Grass View MSA
122041787 5273 Angiosperm View MSA
121351488 5274 Embryophyte View MSA
123382186 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.409        
cufflinks 1.19       Low
cufflinks 22.299     High High
cufflinks 27.457     High High
cufflinks 3.761        
cufflinks 16.439     High High
cufflinks 4.676        
cufflinks 2.873        
cufflinks 8.769        
cufflinks 6.682        
cufflinks 4.9        
cufflinks 5.796        
cufflinks 6.306        
cufflinks 5.601        
cufflinks 9.68        
cufflinks 7.209        
cufflinks 4.443        
cufflinks 4.07        
cufflinks 15.689     High High
cufflinks 6.117        
cufflinks 3.634        
cufflinks 3.937        
cufflinks 4.189        
cufflinks 4.277        
cufflinks 4.282        
cufflinks 2.169       Low
cufflinks 9.979        
cufflinks 4.224        
cufflinks 3.715        
cufflinks 5.932        

0 Strain