Gene : Sobic.003G366500 S. bicolor v3.1.1
Defline:  (1 of 2) PTHR20902//PTHR20902:SF0 - 41-2 PROTEIN ANTIGEN-RELATED // TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 5 Genomic Order:  3852
Name:  ? Sobic.003G366500 Secondary Identifier:  ? PAC:37915902
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.003G366500 0.5kb upstream 0.5kb upstream 6812 true Chr03: 68270597-68277408 Sorghum bicolor
Sobic.003G366500 0.5kb upstream 0.5kb upstream 500 false Chr03: 68276909-68277408 Sorghum bicolor
Sobic.003G366500 0.5kb downstream 0.5kb downstream 6812 true Chr03: 68270097-68276908 Sorghum bicolor
Sobic.003G366500 0.5kb downstream 0.5kb downstream 500 false Chr03: 68270097-68270596 Sorghum bicolor
Sobic.003G366500 1.0kb upstream 1.0kb upstream 7312 true Chr03: 68270597-68277908 Sorghum bicolor
Sobic.003G366500 1.0kb upstream 1.0kb upstream 1000 false Chr03: 68276909-68277908 Sorghum bicolor
Sobic.003G366500 1.0kb downstream 1.0kb downstream 7312 true Chr03: 68269597-68276908 Sorghum bicolor
Sobic.003G366500 1.0kb downstream 1.0kb downstream 1000 false Chr03: 68269597-68270596 Sorghum bicolor
Sobic.003G366500 2.0kb upstream 2.0kb upstream 8312 true Chr03: 68270597-68278908 Sorghum bicolor
Sobic.003G366500 2.0kb upstream 2.0kb upstream 2000 false Chr03: 68276909-68278908 Sorghum bicolor
Sobic.003G366500 2.0kb downstream 2.0kb downstream 8312 true Chr03: 68268597-68276908 Sorghum bicolor
Sobic.003G366500 2.0kb downstream 2.0kb downstream 2000 false Chr03: 68268597-68270596 Sorghum bicolor
Sobic.003G366500 5.0kb upstream 5.0kb upstream 11312 true Chr03: 68270597-68281908 Sorghum bicolor
Sobic.003G366500 5.0kb upstream 5.0kb upstream 5000 false Chr03: 68276909-68281908 Sorghum bicolor
Sobic.003G366500 5.0kb downstream 5.0kb downstream 11312 true Chr03: 68265597-68276908 Sorghum bicolor
Sobic.003G366500 5.0kb downstream 5.0kb downstream 5000 false Chr03: 68265597-68270596 Sorghum bicolor
Sobic.003G366500 10.0kb upstream 10.0kb upstream 16312 true Chr03: 68270597-68286908 Sorghum bicolor
Sobic.003G366500 10.0kb upstream 10.0kb upstream 10000 false Chr03: 68276909-68286908 Sorghum bicolor
Sobic.003G366500 10.0kb downstream 10.0kb downstream 16312 true Chr03: 68260597-68276908 Sorghum bicolor
Sobic.003G366500 10.0kb downstream 10.0kb downstream 10000 false Chr03: 68260597-68270596 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122177793 5267 Panicoideae View MSA
124571349 5269 Grass View MSA
122045467 5273 Angiosperm View MSA
121344565 5274 Embryophyte View MSA
123425941 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.091        
cufflinks 1.216       Low
cufflinks 3.746        
cufflinks 7.891       High
cufflinks 5.308        
cufflinks 6.032        
cufflinks 3.721        
cufflinks 1.603       Low
cufflinks 7.78       High
cufflinks 7.961       High
cufflinks 4.576        
cufflinks 5.463        
cufflinks 5.89        
cufflinks 5.29        
cufflinks 5.348        
cufflinks 3.307        
cufflinks 4.603        
cufflinks 4.657        
cufflinks 2.424       Low
cufflinks 6.938        
cufflinks 7.044        
cufflinks 6.523        
cufflinks 5.802        
cufflinks 5.294        
cufflinks 2.812       Low
cufflinks 1.161       Low
cufflinks 6.199        
cufflinks 4.556        
cufflinks 3.169        
cufflinks 6.057        

0 Strain