Gene : Sobic.001G048500 S. bicolor v3.1.1
Defline:  (1 of 5) 1.14.12.20 - Pheophorbide a oxygenase / Pheide a oxygenase Genomic Order:  491
Name:  ? Sobic.001G048500 Secondary Identifier:  ? PAC:37939774
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor PWY-5098 Sorghum bicolor pathologic  
Sbicolor PWY-6927 Sorghum bicolor pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.001G048500 0.5kb upstream 0.5kb upstream 1509 true Chr01: 3547029-3548537 Sorghum bicolor
Sobic.001G048500 0.5kb upstream 0.5kb upstream 500 false Chr01: 3548038-3548537 Sorghum bicolor
Sobic.001G048500 0.5kb downstream 0.5kb downstream 1509 true Chr01: 3546529-3548037 Sorghum bicolor
Sobic.001G048500 0.5kb downstream 0.5kb downstream 500 false Chr01: 3546529-3547028 Sorghum bicolor
Sobic.001G048500 1.0kb upstream 1.0kb upstream 2009 true Chr01: 3547029-3549037 Sorghum bicolor
Sobic.001G048500 1.0kb upstream 1.0kb upstream 1000 false Chr01: 3548038-3549037 Sorghum bicolor
Sobic.001G048500 1.0kb downstream 1.0kb downstream 2009 true Chr01: 3546029-3548037 Sorghum bicolor
Sobic.001G048500 1.0kb downstream 1.0kb downstream 1000 false Chr01: 3546029-3547028 Sorghum bicolor
Sobic.001G048500 2.0kb upstream 2.0kb upstream 3009 true Chr01: 3547029-3550037 Sorghum bicolor
Sobic.001G048500 2.0kb upstream 2.0kb upstream 2000 false Chr01: 3548038-3550037 Sorghum bicolor
Sobic.001G048500 2.0kb downstream 2.0kb downstream 3009 true Chr01: 3545029-3548037 Sorghum bicolor
Sobic.001G048500 2.0kb downstream 2.0kb downstream 2000 false Chr01: 3545029-3547028 Sorghum bicolor
Sobic.001G048500 5.0kb upstream 5.0kb upstream 6009 true Chr01: 3547029-3553037 Sorghum bicolor
Sobic.001G048500 5.0kb upstream 5.0kb upstream 5000 false Chr01: 3548038-3553037 Sorghum bicolor
Sobic.001G048500 5.0kb downstream 5.0kb downstream 6009 true Chr01: 3542029-3548037 Sorghum bicolor
Sobic.001G048500 5.0kb downstream 5.0kb downstream 5000 false Chr01: 3542029-3547028 Sorghum bicolor
Sobic.001G048500 10.0kb upstream 10.0kb upstream 11009 true Chr01: 3547029-3558037 Sorghum bicolor
Sobic.001G048500 10.0kb upstream 10.0kb upstream 10000 false Chr01: 3548038-3558037 Sorghum bicolor
Sobic.001G048500 10.0kb downstream 10.0kb downstream 11009 true Chr01: 3537029-3548037 Sorghum bicolor
Sobic.001G048500 10.0kb downstream 10.0kb downstream 10000 false Chr01: 3537029-3547028 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122027752 5273 Angiosperm View MSA
122197326 5267 Panicoideae View MSA
124575278 5269 Grass View MSA
123429167 5275 Viridiplantae View MSA
121348668 5274 Embryophyte View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.201        
cufflinks 0.161        
cufflinks 0.258        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.021     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.158        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.036     Low  
cufflinks 0.177        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.018     Low Low
cufflinks 0.09     Low  
cufflinks 0.097     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.55       High
cufflinks 0.257        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.01     Low Low

0 Strain