Gene : Sobic.001G047600 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR23151:SF56 - DIHYDROLIPOYLLYSINE-RESIDUE ACETYLTRANSFERASE COMPONENT 1 OF PYRUVATE DEHYDROGENASE COMPLEX, MITOCHONDRIAL Genomic Order:  482
Name:  ? Sobic.001G047600 Secondary Identifier:  ? PAC:37942417
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Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor PWY-5173 Sorghum bicolor pathologic  
Sbicolor PWY-5464 Sorghum bicolor pathologic  
Sbicolor PYRUVDEHYD-PWY Sorghum bicolor pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.001G047600 0.5kb upstream 0.5kb upstream 8782 true Chr01: 3492239-3501020 Sorghum bicolor
Sobic.001G047600 0.5kb upstream 0.5kb upstream 500 false Chr01: 3500521-3501020 Sorghum bicolor
Sobic.001G047600 0.5kb downstream 0.5kb downstream 8782 true Chr01: 3491739-3500520 Sorghum bicolor
Sobic.001G047600 0.5kb downstream 0.5kb downstream 500 false Chr01: 3491739-3492238 Sorghum bicolor
Sobic.001G047600 1.0kb upstream 1.0kb upstream 9282 true Chr01: 3492239-3501520 Sorghum bicolor
Sobic.001G047600 1.0kb upstream 1.0kb upstream 1000 false Chr01: 3500521-3501520 Sorghum bicolor
Sobic.001G047600 1.0kb downstream 1.0kb downstream 9282 true Chr01: 3491239-3500520 Sorghum bicolor
Sobic.001G047600 1.0kb downstream 1.0kb downstream 1000 false Chr01: 3491239-3492238 Sorghum bicolor
Sobic.001G047600 2.0kb upstream 2.0kb upstream 10282 true Chr01: 3492239-3502520 Sorghum bicolor
Sobic.001G047600 2.0kb upstream 2.0kb upstream 2000 false Chr01: 3500521-3502520 Sorghum bicolor
Sobic.001G047600 2.0kb downstream 2.0kb downstream 10282 true Chr01: 3490239-3500520 Sorghum bicolor
Sobic.001G047600 2.0kb downstream 2.0kb downstream 2000 false Chr01: 3490239-3492238 Sorghum bicolor
Sobic.001G047600 5.0kb upstream 5.0kb upstream 13282 true Chr01: 3492239-3505520 Sorghum bicolor
Sobic.001G047600 5.0kb upstream 5.0kb upstream 5000 false Chr01: 3500521-3505520 Sorghum bicolor
Sobic.001G047600 5.0kb downstream 5.0kb downstream 13282 true Chr01: 3487239-3500520 Sorghum bicolor
Sobic.001G047600 5.0kb downstream 5.0kb downstream 5000 false Chr01: 3487239-3492238 Sorghum bicolor
Sobic.001G047600 10.0kb upstream 10.0kb upstream 18282 true Chr01: 3492239-3510520 Sorghum bicolor
Sobic.001G047600 10.0kb upstream 10.0kb upstream 10000 false Chr01: 3500521-3510520 Sorghum bicolor
Sobic.001G047600 10.0kb downstream 10.0kb downstream 18282 true Chr01: 3482239-3500520 Sorghum bicolor
Sobic.001G047600 10.0kb downstream 10.0kb downstream 10000 false Chr01: 3482239-3492238 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122040991 5273 Angiosperm View MSA
122186639 5267 Panicoideae View MSA
124588694 5269 Grass View MSA
121346587 5274 Embryophyte View MSA
123426306 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.354        
cufflinks 3.059       Low
cufflinks 3.76       Low
cufflinks 4.997        
cufflinks 5.962        
cufflinks 4.788        
cufflinks 5.47        
cufflinks 4.547        
cufflinks 6.136        
cufflinks 8.607        
cufflinks 11.77       High
cufflinks 9.568        
cufflinks 6.137        
cufflinks 13.962     High High
cufflinks 7.16        
cufflinks 3.818       Low
cufflinks 6.105        
cufflinks 6.446        
cufflinks 3.503       Low
cufflinks 5.581        
cufflinks 5.436        
cufflinks 14.765     High High
cufflinks 13.329     High High
cufflinks 13.833     High High
cufflinks 3.142       Low
cufflinks 3.234       Low
cufflinks 7.394        
cufflinks 5.137        
cufflinks 6.647        
cufflinks 6.799        

0 Strain