Gene : Sobic.001G041800 S. bicolor v3.1.1
Defline:  (1 of 1) K03404 - magnesium chelatase subunit D (chlD, bchD) Genomic Order:  426
Name:  ? Sobic.001G041800 Secondary Identifier:  ? PAC:37942089
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor CHLOROPHYLL-SYN Sorghum bicolor pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.001G041800 0.5kb upstream 0.5kb upstream 10784 true Chr01: 3112405-3123188 Sorghum bicolor
Sobic.001G041800 0.5kb upstream 0.5kb upstream 500 false Chr01: 3122689-3123188 Sorghum bicolor
Sobic.001G041800 0.5kb downstream 0.5kb downstream 10784 true Chr01: 3111905-3122688 Sorghum bicolor
Sobic.001G041800 0.5kb downstream 0.5kb downstream 500 false Chr01: 3111905-3112404 Sorghum bicolor
Sobic.001G041800 1.0kb upstream 1.0kb upstream 11284 true Chr01: 3112405-3123688 Sorghum bicolor
Sobic.001G041800 1.0kb upstream 1.0kb upstream 1000 false Chr01: 3122689-3123688 Sorghum bicolor
Sobic.001G041800 1.0kb downstream 1.0kb downstream 11284 true Chr01: 3111405-3122688 Sorghum bicolor
Sobic.001G041800 1.0kb downstream 1.0kb downstream 1000 false Chr01: 3111405-3112404 Sorghum bicolor
Sobic.001G041800 2.0kb upstream 2.0kb upstream 12284 true Chr01: 3112405-3124688 Sorghum bicolor
Sobic.001G041800 2.0kb upstream 2.0kb upstream 2000 false Chr01: 3122689-3124688 Sorghum bicolor
Sobic.001G041800 2.0kb downstream 2.0kb downstream 12284 true Chr01: 3110405-3122688 Sorghum bicolor
Sobic.001G041800 2.0kb downstream 2.0kb downstream 2000 false Chr01: 3110405-3112404 Sorghum bicolor
Sobic.001G041800 5.0kb upstream 5.0kb upstream 15284 true Chr01: 3112405-3127688 Sorghum bicolor
Sobic.001G041800 5.0kb upstream 5.0kb upstream 5000 false Chr01: 3122689-3127688 Sorghum bicolor
Sobic.001G041800 5.0kb downstream 5.0kb downstream 15284 true Chr01: 3107405-3122688 Sorghum bicolor
Sobic.001G041800 5.0kb downstream 5.0kb downstream 5000 false Chr01: 3107405-3112404 Sorghum bicolor
Sobic.001G041800 10.0kb upstream 10.0kb upstream 20284 true Chr01: 3112405-3132688 Sorghum bicolor
Sobic.001G041800 10.0kb upstream 10.0kb upstream 10000 false Chr01: 3122689-3132688 Sorghum bicolor
Sobic.001G041800 10.0kb downstream 10.0kb downstream 20284 true Chr01: 3102405-3122688 Sorghum bicolor
Sobic.001G041800 10.0kb downstream 10.0kb downstream 10000 false Chr01: 3102405-3112404 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026552 5273 Angiosperm View MSA
122190089 5267 Panicoideae View MSA
124573827 5269 Grass View MSA
121344824 5274 Embryophyte View MSA
123424530 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.573        
cufflinks 24.912     High High
cufflinks 10.066     High  
cufflinks 4.339        
cufflinks 6.348        
cufflinks 9.164        
cufflinks 17.877     High High
cufflinks 53.488     High High
cufflinks 3.17        
cufflinks 2.648        
cufflinks 1.466        
cufflinks 1.007       Low
cufflinks 3.462        
cufflinks 1.129       Low
cufflinks 5.59        
cufflinks 13.065     High  
cufflinks 18.774     High High
cufflinks 19.608     High High
cufflinks 21.883     High High
cufflinks 7.779        
cufflinks 6.711        
cufflinks 1.238       Low
cufflinks 1.096       Low
cufflinks 1.247       Low
cufflinks 10.508     High  
cufflinks 38.774     High High
cufflinks 1.237       Low
cufflinks 0.394       Low
cufflinks 46.307     High High
cufflinks 7.03        

0 Strain