Gene : Sobic.001G042700 S. bicolor v3.1.1
Defline:  (1 of 16) PF04195 - Putative gypsy type transposon (Transposase_28) Genomic Order:  435
Name:  ? Sobic.001G042700 Secondary Identifier:  ? PAC:37942889
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0 Pathways

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.001G042700 0.5kb upstream 0.5kb upstream 4182 true Chr01: 3173286-3177467 Sorghum bicolor
Sobic.001G042700 0.5kb upstream 0.5kb upstream 500 false Chr01: 3173286-3173785 Sorghum bicolor
Sobic.001G042700 0.5kb downstream 0.5kb downstream 4182 true Chr01: 3173786-3177967 Sorghum bicolor
Sobic.001G042700 0.5kb downstream 0.5kb downstream 500 false Chr01: 3177468-3177967 Sorghum bicolor
Sobic.001G042700 1.0kb upstream 1.0kb upstream 4682 true Chr01: 3172786-3177467 Sorghum bicolor
Sobic.001G042700 1.0kb upstream 1.0kb upstream 1000 false Chr01: 3172786-3173785 Sorghum bicolor
Sobic.001G042700 1.0kb downstream 1.0kb downstream 4682 true Chr01: 3173786-3178467 Sorghum bicolor
Sobic.001G042700 1.0kb downstream 1.0kb downstream 1000 false Chr01: 3177468-3178467 Sorghum bicolor
Sobic.001G042700 2.0kb upstream 2.0kb upstream 5682 true Chr01: 3171786-3177467 Sorghum bicolor
Sobic.001G042700 2.0kb upstream 2.0kb upstream 2000 false Chr01: 3171786-3173785 Sorghum bicolor
Sobic.001G042700 2.0kb downstream 2.0kb downstream 5682 true Chr01: 3173786-3179467 Sorghum bicolor
Sobic.001G042700 2.0kb downstream 2.0kb downstream 2000 false Chr01: 3177468-3179467 Sorghum bicolor
Sobic.001G042700 5.0kb upstream 5.0kb upstream 8682 true Chr01: 3168786-3177467 Sorghum bicolor
Sobic.001G042700 5.0kb upstream 5.0kb upstream 5000 false Chr01: 3168786-3173785 Sorghum bicolor
Sobic.001G042700 5.0kb downstream 5.0kb downstream 8682 true Chr01: 3173786-3182467 Sorghum bicolor
Sobic.001G042700 5.0kb downstream 5.0kb downstream 5000 false Chr01: 3177468-3182467 Sorghum bicolor
Sobic.001G042700 10.0kb upstream 10.0kb upstream 13682 true Chr01: 3163786-3177467 Sorghum bicolor
Sobic.001G042700 10.0kb upstream 10.0kb upstream 10000 false Chr01: 3163786-3173785 Sorghum bicolor
Sobic.001G042700 10.0kb downstream 10.0kb downstream 13682 true Chr01: 3173786-3187467 Sorghum bicolor
Sobic.001G042700 10.0kb downstream 10.0kb downstream 10000 false Chr01: 3177468-3187467 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121995681 5273 Angiosperm View MSA
122197520 5267 Panicoideae View MSA
124589230 5269 Grass View MSA
121265867 5274 Embryophyte View MSA
123304229 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.197       High
cufflinks 0.003     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.628       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.035     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.024     Low  
cufflinks 0.02     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.006     Low Low
cufflinks 0.037     Low  
cufflinks 0.005     Low Low
cufflinks 0.056     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.028     Low  
cufflinks 0.025     Low  
cufflinks 0.063     Low  
cufflinks 0.026     Low  
cufflinks 1.967       High
cufflinks 0.013     Low  
cufflinks 0.004     Low Low
cufflinks 0.006     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.025     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.129        

0 Strain