Gene : Sobic.001G042600 S. bicolor v3.1.1
Defline:  (1 of 16) PF04195 - Putative gypsy type transposon (Transposase_28) Genomic Order:  434
Name:  ? Sobic.001G042600 Secondary Identifier:  ? PAC:37937550
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0 Pathways

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.001G042600 0.5kb upstream 0.5kb upstream 5198 true Chr01: 3167016-3172213 Sorghum bicolor
Sobic.001G042600 0.5kb upstream 0.5kb upstream 500 false Chr01: 3171714-3172213 Sorghum bicolor
Sobic.001G042600 0.5kb downstream 0.5kb downstream 5198 true Chr01: 3166516-3171713 Sorghum bicolor
Sobic.001G042600 0.5kb downstream 0.5kb downstream 500 false Chr01: 3166516-3167015 Sorghum bicolor
Sobic.001G042600 1.0kb upstream 1.0kb upstream 5698 true Chr01: 3167016-3172713 Sorghum bicolor
Sobic.001G042600 1.0kb upstream 1.0kb upstream 1000 false Chr01: 3171714-3172713 Sorghum bicolor
Sobic.001G042600 1.0kb downstream 1.0kb downstream 5698 true Chr01: 3166016-3171713 Sorghum bicolor
Sobic.001G042600 1.0kb downstream 1.0kb downstream 1000 false Chr01: 3166016-3167015 Sorghum bicolor
Sobic.001G042600 2.0kb upstream 2.0kb upstream 6698 true Chr01: 3167016-3173713 Sorghum bicolor
Sobic.001G042600 2.0kb upstream 2.0kb upstream 2000 false Chr01: 3171714-3173713 Sorghum bicolor
Sobic.001G042600 2.0kb downstream 2.0kb downstream 6698 true Chr01: 3165016-3171713 Sorghum bicolor
Sobic.001G042600 2.0kb downstream 2.0kb downstream 2000 false Chr01: 3165016-3167015 Sorghum bicolor
Sobic.001G042600 5.0kb upstream 5.0kb upstream 9698 true Chr01: 3167016-3176713 Sorghum bicolor
Sobic.001G042600 5.0kb upstream 5.0kb upstream 5000 false Chr01: 3171714-3176713 Sorghum bicolor
Sobic.001G042600 5.0kb downstream 5.0kb downstream 9698 true Chr01: 3162016-3171713 Sorghum bicolor
Sobic.001G042600 5.0kb downstream 5.0kb downstream 5000 false Chr01: 3162016-3167015 Sorghum bicolor
Sobic.001G042600 10.0kb upstream 10.0kb upstream 14698 true Chr01: 3167016-3181713 Sorghum bicolor
Sobic.001G042600 10.0kb upstream 10.0kb upstream 10000 false Chr01: 3171714-3181713 Sorghum bicolor
Sobic.001G042600 10.0kb downstream 10.0kb downstream 14698 true Chr01: 3157016-3171713 Sorghum bicolor
Sobic.001G042600 10.0kb downstream 10.0kb downstream 10000 false Chr01: 3157016-3167015 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121995681 5273 Angiosperm View MSA
122197520 5267 Panicoideae View MSA
124589230 5269 Grass View MSA
121265867 5274 Embryophyte View MSA
123304229 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.586       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.009     Low Low
cufflinks 0.031     Low  
cufflinks 1.234       High
cufflinks 0.017     Low  
cufflinks 0.165        
cufflinks 0.006     Low Low
cufflinks 0.059     Low  
cufflinks 0.159        
cufflinks 0.012     Low Low
cufflinks 0.049     Low  
cufflinks 0.077        
cufflinks 0.032     Low  
cufflinks 0.03     Low  
cufflinks 0.012     Low Low
cufflinks 0.193        
cufflinks 0.213        
cufflinks 0.019     Low  
cufflinks 0.188        
cufflinks 2.272       High
cufflinks 0.138        
cufflinks 0.048     Low  
cufflinks 0.086     Low  
cufflinks 0.009     Low Low
cufflinks 0.009     Low Low
cufflinks 0.007     Low Low
cufflinks 0.077        
cufflinks 0.055     Low  
cufflinks 0.052     Low  

0 Strain