Gene : Sobic.001G035200 S. bicolor v3.1.1
Defline:  (1 of 1) K04532 - amyloid beta precursor protein binding protein 1 (APPBP1) Genomic Order:  353
Name:  ? Sobic.001G035200 Secondary Identifier:  ? PAC:37937989
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.001G035200 0.5kb upstream 0.5kb upstream 9491 true Chr01: 2649168-2658658 Sorghum bicolor
Sobic.001G035200 0.5kb upstream 0.5kb upstream 500 false Chr01: 2658159-2658658 Sorghum bicolor
Sobic.001G035200 0.5kb downstream 0.5kb downstream 9491 true Chr01: 2648668-2658158 Sorghum bicolor
Sobic.001G035200 0.5kb downstream 0.5kb downstream 500 false Chr01: 2648668-2649167 Sorghum bicolor
Sobic.001G035200 1.0kb upstream 1.0kb upstream 9991 true Chr01: 2649168-2659158 Sorghum bicolor
Sobic.001G035200 1.0kb upstream 1.0kb upstream 1000 false Chr01: 2658159-2659158 Sorghum bicolor
Sobic.001G035200 1.0kb downstream 1.0kb downstream 9991 true Chr01: 2648168-2658158 Sorghum bicolor
Sobic.001G035200 1.0kb downstream 1.0kb downstream 1000 false Chr01: 2648168-2649167 Sorghum bicolor
Sobic.001G035200 2.0kb upstream 2.0kb upstream 10991 true Chr01: 2649168-2660158 Sorghum bicolor
Sobic.001G035200 2.0kb upstream 2.0kb upstream 2000 false Chr01: 2658159-2660158 Sorghum bicolor
Sobic.001G035200 2.0kb downstream 2.0kb downstream 10991 true Chr01: 2647168-2658158 Sorghum bicolor
Sobic.001G035200 2.0kb downstream 2.0kb downstream 2000 false Chr01: 2647168-2649167 Sorghum bicolor
Sobic.001G035200 5.0kb upstream 5.0kb upstream 13991 true Chr01: 2649168-2663158 Sorghum bicolor
Sobic.001G035200 5.0kb upstream 5.0kb upstream 5000 false Chr01: 2658159-2663158 Sorghum bicolor
Sobic.001G035200 5.0kb downstream 5.0kb downstream 13991 true Chr01: 2644168-2658158 Sorghum bicolor
Sobic.001G035200 5.0kb downstream 5.0kb downstream 5000 false Chr01: 2644168-2649167 Sorghum bicolor
Sobic.001G035200 10.0kb upstream 10.0kb upstream 18991 true Chr01: 2649168-2668158 Sorghum bicolor
Sobic.001G035200 10.0kb upstream 10.0kb upstream 10000 false Chr01: 2658159-2668158 Sorghum bicolor
Sobic.001G035200 10.0kb downstream 10.0kb downstream 18991 true Chr01: 2639168-2658158 Sorghum bicolor
Sobic.001G035200 10.0kb downstream 10.0kb downstream 10000 false Chr01: 2639168-2649167 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041299 5273 Angiosperm View MSA
122195070 5267 Panicoideae View MSA
124577740 5269 Grass View MSA
121347842 5274 Embryophyte View MSA
123426326 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.934        
cufflinks 0.81       Low
cufflinks 1.586        
cufflinks 3.023        
cufflinks 2.476        
cufflinks 1.572        
cufflinks 2.455        
cufflinks 0.877       Low
cufflinks 2.965        
cufflinks 3.68       High
cufflinks 3.147        
cufflinks 2.679        
cufflinks 2.291        
cufflinks 2.842        
cufflinks 2.815        
cufflinks 1.471        
cufflinks 2.704        
cufflinks 2.883        
cufflinks 0.887       Low
cufflinks 2.095        
cufflinks 3.928       High
cufflinks 3.477        
cufflinks 3.489        
cufflinks 3.243        
cufflinks 1.257       Low
cufflinks 0.763       Low
cufflinks 3.008        
cufflinks 1.963        
cufflinks 1.718        
cufflinks 4.237       High

0 Strain