Gene : Sobic.003G374500 S. bicolor v3.1.1
Defline:  (1 of 59) PF01535//PF13041//PF13812 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) Genomic Order:  3940
Name:  ? Sobic.003G374500 Secondary Identifier:  ? PAC:37918514
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.003G374500 0.5kb upstream 0.5kb upstream 4378 true Chr03: 68953573-68957950 Sorghum bicolor
Sobic.003G374500 0.5kb upstream 0.5kb upstream 500 false Chr03: 68957451-68957950 Sorghum bicolor
Sobic.003G374500 0.5kb downstream 0.5kb downstream 4378 true Chr03: 68953073-68957450 Sorghum bicolor
Sobic.003G374500 0.5kb downstream 0.5kb downstream 500 false Chr03: 68953073-68953572 Sorghum bicolor
Sobic.003G374500 1.0kb upstream 1.0kb upstream 4878 true Chr03: 68953573-68958450 Sorghum bicolor
Sobic.003G374500 1.0kb upstream 1.0kb upstream 1000 false Chr03: 68957451-68958450 Sorghum bicolor
Sobic.003G374500 1.0kb downstream 1.0kb downstream 4878 true Chr03: 68952573-68957450 Sorghum bicolor
Sobic.003G374500 1.0kb downstream 1.0kb downstream 1000 false Chr03: 68952573-68953572 Sorghum bicolor
Sobic.003G374500 2.0kb upstream 2.0kb upstream 5878 true Chr03: 68953573-68959450 Sorghum bicolor
Sobic.003G374500 2.0kb upstream 2.0kb upstream 2000 false Chr03: 68957451-68959450 Sorghum bicolor
Sobic.003G374500 2.0kb downstream 2.0kb downstream 5878 true Chr03: 68951573-68957450 Sorghum bicolor
Sobic.003G374500 2.0kb downstream 2.0kb downstream 2000 false Chr03: 68951573-68953572 Sorghum bicolor
Sobic.003G374500 5.0kb upstream 5.0kb upstream 8878 true Chr03: 68953573-68962450 Sorghum bicolor
Sobic.003G374500 5.0kb upstream 5.0kb upstream 5000 false Chr03: 68957451-68962450 Sorghum bicolor
Sobic.003G374500 5.0kb downstream 5.0kb downstream 8878 true Chr03: 68948573-68957450 Sorghum bicolor
Sobic.003G374500 5.0kb downstream 5.0kb downstream 5000 false Chr03: 68948573-68953572 Sorghum bicolor
Sobic.003G374500 10.0kb upstream 10.0kb upstream 13878 true Chr03: 68953573-68967450 Sorghum bicolor
Sobic.003G374500 10.0kb upstream 10.0kb upstream 10000 false Chr03: 68957451-68967450 Sorghum bicolor
Sobic.003G374500 10.0kb downstream 10.0kb downstream 13878 true Chr03: 68943573-68957450 Sorghum bicolor
Sobic.003G374500 10.0kb downstream 10.0kb downstream 10000 false Chr03: 68943573-68953572 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122189213 5267 Panicoideae View MSA
124582189 5269 Grass View MSA
122042535 5273 Angiosperm View MSA
121309984 5274 Embryophyte View MSA
123347596 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.39       High
cufflinks 0.031     Low Low
cufflinks 0.121        
cufflinks 0.316        
cufflinks 0.322        
cufflinks 0.239        
cufflinks 0.133        
cufflinks 0.04     Low Low
cufflinks 0.294        
cufflinks 0.373       High
cufflinks 0.124        
cufflinks 0.184        
cufflinks 0.251        
cufflinks 0.18        
cufflinks 0.246        
cufflinks 0.058     Low Low
cufflinks 0.125        
cufflinks 0.157        
cufflinks 0.088     Low  
cufflinks 0.131        
cufflinks 0.5       High
cufflinks 0.176        
cufflinks 0.143        
cufflinks 0.196        
cufflinks 0.06       Low
cufflinks 0.04       Low
cufflinks 0.212        
cufflinks 0.238        
cufflinks 0.067     Low Low
cufflinks 0.328       High

0 Strain