Gene : Sobic.001G158400 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR22942:SF37 - DNA REPAIR PROTEIN RECA HOMOLOG 1, CHLOROPLASTIC Genomic Order:  1647
Name:  ? Sobic.001G158400 Secondary Identifier:  ? PAC:37939690
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.001G158400 0.5kb upstream 0.5kb upstream 7032 true Chr01: 12840431-12847462 Sorghum bicolor
Sobic.001G158400 0.5kb upstream 0.5kb upstream 500 false Chr01: 12846963-12847462 Sorghum bicolor
Sobic.001G158400 0.5kb downstream 0.5kb downstream 7032 true Chr01: 12839931-12846962 Sorghum bicolor
Sobic.001G158400 0.5kb downstream 0.5kb downstream 500 false Chr01: 12839931-12840430 Sorghum bicolor
Sobic.001G158400 1.0kb upstream 1.0kb upstream 7532 true Chr01: 12840431-12847962 Sorghum bicolor
Sobic.001G158400 1.0kb upstream 1.0kb upstream 1000 false Chr01: 12846963-12847962 Sorghum bicolor
Sobic.001G158400 1.0kb downstream 1.0kb downstream 7532 true Chr01: 12839431-12846962 Sorghum bicolor
Sobic.001G158400 1.0kb downstream 1.0kb downstream 1000 false Chr01: 12839431-12840430 Sorghum bicolor
Sobic.001G158400 2.0kb upstream 2.0kb upstream 8532 true Chr01: 12840431-12848962 Sorghum bicolor
Sobic.001G158400 2.0kb upstream 2.0kb upstream 2000 false Chr01: 12846963-12848962 Sorghum bicolor
Sobic.001G158400 2.0kb downstream 2.0kb downstream 8532 true Chr01: 12838431-12846962 Sorghum bicolor
Sobic.001G158400 2.0kb downstream 2.0kb downstream 2000 false Chr01: 12838431-12840430 Sorghum bicolor
Sobic.001G158400 5.0kb upstream 5.0kb upstream 11532 true Chr01: 12840431-12851962 Sorghum bicolor
Sobic.001G158400 5.0kb upstream 5.0kb upstream 5000 false Chr01: 12846963-12851962 Sorghum bicolor
Sobic.001G158400 5.0kb downstream 5.0kb downstream 11532 true Chr01: 12835431-12846962 Sorghum bicolor
Sobic.001G158400 5.0kb downstream 5.0kb downstream 5000 false Chr01: 12835431-12840430 Sorghum bicolor
Sobic.001G158400 10.0kb upstream 10.0kb upstream 16532 true Chr01: 12840431-12856962 Sorghum bicolor
Sobic.001G158400 10.0kb upstream 10.0kb upstream 10000 false Chr01: 12846963-12856962 Sorghum bicolor
Sobic.001G158400 10.0kb downstream 10.0kb downstream 16532 true Chr01: 12830431-12846962 Sorghum bicolor
Sobic.001G158400 10.0kb downstream 10.0kb downstream 10000 false Chr01: 12830431-12840430 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122175618 5267 Panicoideae View MSA
124575595 5269 Grass View MSA
122042524 5273 Angiosperm View MSA
121345028 5274 Embryophyte View MSA
123425276 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.606        
cufflinks 0.727       Low
cufflinks 1.106        
cufflinks 1.164        
cufflinks 2.001        
cufflinks 1.251        
cufflinks 2.585        
cufflinks 1.5        
cufflinks 1.012        
cufflinks 1.377        
cufflinks 1.92        
cufflinks 1.087        
cufflinks 0.774       Low
cufflinks 1.337        
cufflinks 1.276        
cufflinks 0.799       Low
cufflinks 2.974       High
cufflinks 3.441       High
cufflinks 0.49       Low
cufflinks 1.525        
cufflinks 4.139       High
cufflinks 2.037        
cufflinks 1.849        
cufflinks 1.908        
cufflinks 0.678       Low
cufflinks 0.519       Low
cufflinks 1.147        
cufflinks 1.703        
cufflinks 5.903       High
cufflinks 2.553        

0 Strain