Gene : Sobic.001G131400 S. bicolor v3.1.1
Defline:  (1 of 3) 3.1.2.28 - 1,4-dihydroxy-2-naphthoyl-CoA hydrolase Genomic Order:  1363
Name:  ? Sobic.001G131400 Secondary Identifier:  ? PAC:37938064
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor PWY-5837 Sorghum bicolor pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.001G131400 0.5kb upstream 0.5kb upstream 6161 true Chr01: 10319097-10325257 Sorghum bicolor
Sobic.001G131400 0.5kb upstream 0.5kb upstream 500 false Chr01: 10319097-10319596 Sorghum bicolor
Sobic.001G131400 0.5kb downstream 0.5kb downstream 6161 true Chr01: 10319597-10325757 Sorghum bicolor
Sobic.001G131400 0.5kb downstream 0.5kb downstream 500 false Chr01: 10325258-10325757 Sorghum bicolor
Sobic.001G131400 1.0kb upstream 1.0kb upstream 6661 true Chr01: 10318597-10325257 Sorghum bicolor
Sobic.001G131400 1.0kb upstream 1.0kb upstream 1000 false Chr01: 10318597-10319596 Sorghum bicolor
Sobic.001G131400 1.0kb downstream 1.0kb downstream 6661 true Chr01: 10319597-10326257 Sorghum bicolor
Sobic.001G131400 1.0kb downstream 1.0kb downstream 1000 false Chr01: 10325258-10326257 Sorghum bicolor
Sobic.001G131400 2.0kb upstream 2.0kb upstream 7661 true Chr01: 10317597-10325257 Sorghum bicolor
Sobic.001G131400 2.0kb upstream 2.0kb upstream 2000 false Chr01: 10317597-10319596 Sorghum bicolor
Sobic.001G131400 2.0kb downstream 2.0kb downstream 7661 true Chr01: 10319597-10327257 Sorghum bicolor
Sobic.001G131400 2.0kb downstream 2.0kb downstream 2000 false Chr01: 10325258-10327257 Sorghum bicolor
Sobic.001G131400 5.0kb upstream 5.0kb upstream 10661 true Chr01: 10314597-10325257 Sorghum bicolor
Sobic.001G131400 5.0kb upstream 5.0kb upstream 5000 false Chr01: 10314597-10319596 Sorghum bicolor
Sobic.001G131400 5.0kb downstream 5.0kb downstream 10661 true Chr01: 10319597-10330257 Sorghum bicolor
Sobic.001G131400 5.0kb downstream 5.0kb downstream 5000 false Chr01: 10325258-10330257 Sorghum bicolor
Sobic.001G131400 10.0kb upstream 10.0kb upstream 15661 true Chr01: 10309597-10325257 Sorghum bicolor
Sobic.001G131400 10.0kb upstream 10.0kb upstream 10000 false Chr01: 10309597-10319596 Sorghum bicolor
Sobic.001G131400 10.0kb downstream 10.0kb downstream 15661 true Chr01: 10319597-10335257 Sorghum bicolor
Sobic.001G131400 10.0kb downstream 10.0kb downstream 10000 false Chr01: 10325258-10335257 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122199005 5267 Panicoideae View MSA
124584994 5269 Grass View MSA
122042191 5273 Angiosperm View MSA
121348407 5274 Embryophyte View MSA
123380851 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.323       High
cufflinks 1.649        
cufflinks 1.908        
cufflinks 3.923        
cufflinks 0.397       Low
cufflinks 2.543        
cufflinks 1.882        
cufflinks 4.797       High
cufflinks 1.458        
cufflinks 1.095        
cufflinks 2.719        
cufflinks 1.927        
cufflinks 2.955        
cufflinks 2.075        
cufflinks 2.583        
cufflinks 2.327        
cufflinks 2.3        
cufflinks 2.195        
cufflinks 2.129        
cufflinks 2.591        
cufflinks 0.065     Low Low
cufflinks 2.157        
cufflinks 1.768        
cufflinks 1.555        
cufflinks 2.627        
cufflinks 2.524        
cufflinks 2.298        
cufflinks 1.115        
cufflinks 3.493        
cufflinks 2.413        

0 Strain